Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,917,396	0	A	T	20.2%	154.8 / 10.5	81	intergenic (‑21/+6)	atpD/atpG	ATP synthase F1 complex subunit beta/ATP synthase F1 complex subunit gamma
Reads supporting (aligned to +/- strand):  ref base A (32/31);  new base T (0/16);  total (33/48)
Fisher's exact test for biased strand distribution p-value = 9.46e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACC  >  NC_000913/3917254‑3917534                                                                                                                                               |                                                                                                                                           aggaCCAGACGCCCATTACCATTTTGCACCTCAAGAGCACCGTACACGCGCGGTACGGCATCCTGAGGGAATGCGACGTCAACTACGGCGCCGATTACCGGGACAATCTTGCCAGTAGCCATCTTAAATCCTCTACGAAATaa                                                                                                                                            <  1:984169/140‑1 (MQ=255) aGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTACATCCTCTACGAAATaa                                                                                                                                            >  1:907411/1‑143 (MQ=255)  gCACCAGATCCTCATCTGCAGTTTGCACCTCAAGCGCGTCGTGCACGCGCGGTACGGCATCCTGAGGGAATGCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAAc                                                                                                                                           <  2:552371/143‑1 (MQ=255)     ccAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTg                                                                                                                                        <  1:541356/143‑1 (MQ=255)      cAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGt                                                                                                                                       >  1:967819/1‑143 (MQ=255)      cAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGAAATTCGACGTCAACTACGGCGCCGATTACCTGGACGATTGGTCCAGTAGCCATATTAAATCGTCTACGAAATAACCTGt                                                                                                                                       >  1:582760/1‑143 (MQ=255)       aggcGCTGATTACCTTGTTGCACCGCAAGAGCATCTTACATGCGCGGTCCGGTATCCTGTGTGAATTCGTCGGCACCTACGGCGCCGATTACCTTGACAATCTTGCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGtt                                                                                                                                      <  2:381285/140‑1 (MQ=255)       agccGCTCATGACCATTGTGCACCGCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGtt                                                                                                                                      <  1:191699/140‑1 (MQ=255)        gACGCTCCTTACCATTTTGCACCACAAGAGCATCGTAGACGCGCGGTACGGCATCCTGAGGGAAGTCGCCGTCAAGTACGGCGCCGATTACCTGCACAATCTTCCCAGTAGCATTCTTAAAGCTCCTCCAGAATAAACTGttt                                                                                                                                     >  2:680624/1‑143 (MQ=255)        gACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGttt                                                                                                                                     >  1:515627/1‑143 (MQ=255)             tCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTCAATCCCCTACGTAATCACCAGTTTAAAcc                                                                                                                                >  1:732726/1‑143 (MQ=255)               aTTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACcgc                                                                                                                              >  1:170828/1‑143 (MQ=255)                ttACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCCTCTTAAATCCTCTCCGCAATCACCTGTTTAAACcgcg                                                                                                                             >  1:49760/1‑143 (MQ=255)                  aCCGTTTTGCACCTCAAGCGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTTCGAAATAACCTGTTTAAACCgcggc                                                                                                                           <  2:399433/143‑1 (MQ=255)                   ccaacttGAACCTCGAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCgcggcg                                                                                                                          <  1:393649/138‑1 (MQ=255)                     aTTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCggcggc                                                                                                                        <  2:515627/143‑1 (MQ=255)                     aTTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCggcggc                                                                                                                        >  2:101553/1‑143 (MQ=255)                       tttGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGccc                                                                                                                      <  1:721529/143‑1 (MQ=255)                        gggCACGTCACGAGCATCGGACACGCGCGGCACGGCATCCTGAGGGAGTTCGCCGTCAACTCCGGCGCCTATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGcccc                                                                                                                     <  2:169178/141‑1 (MQ=255)                         tGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTGTAAACCGCGGCGGccccc                                                                                                                    >  1:15157/1‑143 (MQ=255)                              cTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGCCGTCCACTACGGCGCCGATTACCTGGACAATCTTTCGAGCGGCCATCTGCACTCATCTACATAATAACCCGTCTAAACAGCGGCGGCCCCCGacac                                                                                                               >  2:1020958/1‑143 (MQ=255)                                   gagCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTACACCGCGGCGGCCCCCGAGAccctct                                                                                                          >  2:920362/1‑138 (MQ=255)                                      cATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTACCCATCTTAAATCCTCTACGAAGTAACCTGTCTCAACCCCCGCGGCCCCCCACACGATCTCgg                                                                                                       >  2:443743/1‑143 (MQ=255)                                       aggtgacacGGGCGGTACGGGATGCGGAGGGAATTGGACGTCAACTACGGCGCCGATTACCTGGACTATCTTTCCAGTAGCCAGCTTAAATCCTCTACGAATTTTTTTTTTAATGATGCGGCGACCACCGAGACGATCTCGGt                                                                                                      <  2:466554/138‑1 (MQ=255)                                         cGTACACGCGCGGTACGGCCTCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGa                                                                                                    <  1:1021749/143‑1 (MQ=255)                                         cGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAATTTTCTTGTTAATGATGCGGCGACCACCGAGACGATCTCGGTGa                                                                                                    <  2:940064/143‑1 (MQ=255)                                         cGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTGCCAGTAGCCATCTTAAATCCTCTACGAATTTTTTTTTTAATGATACGGCGACCACCGAGACGATCTCGGTGa                                                                                                    <  2:206310/143‑1 (MQ=255)                                          gTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCAGCCCCCGAGACGATCTCGATGac                                                                                                   >  1:560790/1‑142 (MQ=255)                                          gTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCGCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAg                                                                                                   >  1:187058/1‑143 (MQ=255)                                             cacGCTCTGTACGGCCTTCTGTGGATATTCGACTTCACCTACGGCGCCGATTACCTGGACATTCTTTCCAGTAGCCATCTTAAATCCTCGTCGTATTTTTTTTTTAATGATACGGCGACCACCGAGACGATCTCGGTGAGTTc                                                                                                <  2:283392/143‑1 (MQ=255)                                             cacGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATATTCTTTTTATGCTGCGGCGACCACCGAGACGATCTCGGTGAGTTc                                                                                                <  2:692643/143‑1 (MQ=255)                                              acGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCCACTCAAAAGCTCGACGAGATAACCTGCGTAAACCGCGGCGGCCCCCGAGACTGTCTCGGTGAGTTcc                                                                                               >  1:646241/1‑143 (MQ=255)                                              acGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTAGACAATCTTTCCCGTAACCACCATATATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCGTAGACGATCTCGGTGAGTTcc                                                                                               >  1:239902/1‑143 (MQ=255)                                                 cgcgGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGa                                                                                            >  2:525964/1‑143 (MQ=255)                                                 cgcgGTACGGCAGCCTGAGGGAATTCGACGTCAATTAGCGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAATTTTTCTGTTTATGCTGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGa                                                                                            <  2:697192/143‑1 (MQ=255)                                                    ggTACGCCATCCTGAGGGAATTCGAAGACAACTACGGCGCCGATTACCTGGACACTCTTTCCAGTAGCGATCTTAAATCATCGACGAAATAACCTGTTCAAACCGCGGCGGACCCCGAGACGATCTCGGTGAGTACCCGAggc                                                                                         >  2:524098/1‑141 (MQ=255)                                                     gTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAGCCGCGGCGGCCACCGAGACGATCTCGGTGAGTTCCTGAGTaa                                                                                        <  2:967819/143‑1 (MQ=255)                                                     gTACGGCATCCCGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTaa                                                                                        <  1:259283/143‑1 (MQ=255)                                                          gCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAAGCCTCTTCGATATTTCCTTTTTAAGCCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTg                                                                                   <  2:664533/143‑1 (MQ=255)                                                           cATCTTGTGTGAATTCGACGTCAACTGCTGCGCCGTTTTCCTTGGCAATCTTTCCAGTAGCCATCTTAAACCGTCGACGCATTTTTTTTTTAATGATGCGGCGACCACCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTgg                                                                                  <  2:988333/143‑1 (MQ=255)                                                           cATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTgg                                                                                  <  1:24453/143‑1 (MQ=255)                                                           cATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTgg                                                                                  <  1:793771/143‑1 (MQ=255)                                                            aTCCTGAGGGAATTCGACGTGAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATTTCTTGTTAATGCTGCGGCGACCACCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGc                                                                                 <  2:102383/143‑1 (MQ=255)                                                            aTCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGc                                                                                 <  1:525964/143‑1 (MQ=255)                                                              ccTGAGGGAATTCGACGTCAATTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCt                                                                               <  1:901803/143‑1 (MQ=255)                                                                 gAGGGAATTCGACGTCAACTACGGCGCCGAGTACCTGGACAATCGTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGAc                                                                            <  1:637261/143‑1 (MQ=255)                                                                  aGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATACCCAGCGAACTGCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACg                                                                           >  1:756300/1‑143 (MQ=255)                                                                    ggAATTCGACGTCAACTACGGCGCCGATTCCCTGGACAATCTTTCCAGTAGCCATCTTAACTCCTCTACGAAATATTCTTTTTATGCCGCGGCGACCACCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAg                                                                         <  2:325740/143‑1 (MQ=255)                                                                    ggAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCCCGACGAAATAACCTGGTTAAACCGCGGCGGCCCCCGAGACGACCTCGGTGGGCTCCTGAGTACTGCTCGCCTGACCAg                                                                         >  2:1014814/1‑143 (MQ=255)                                                                     gtatgcGACGTCCATTATGGTGCGGATTACCTGGACGATCTTTCCAGTAGCCATCTGACATCCTTTGTGATTTTTTTTTTTAATGATACGGCGACCACCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGc                                                                        <  2:258834/138‑1 (MQ=255)                                                                           gACGTCAAGTGCGGCGCCGATTACCTGGACAATCTTTCCCGTCGGACCGTTGTGCCCTCTACGCAATTACCGGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTttgtt                                                                  <  1:981953/143‑1 (MQ=255)                                                                           gACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTttgtt                                                                  <  1:563741/143‑1 (MQ=255)                                                                               tCAACTCCGGCGCCGATTACCTCGACACTCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGtat                                                              <  1:309110/143‑1 (MQ=255)                                                                                 aaCTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATAc                                                            >  1:490334/1‑143 (MQ=255)                                                                                 aaCTACGGCGCCCATTACCTTGACAATCTTTCCTGGAGCCATCTTAAATCCTCTACGACTTTTTGTTTTAATGACGCGGCGACCACCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATAc                                                            <  2:648518/143‑1 (MQ=255)                                                                                       ggCGCGTATTACCTGGATATTCTTGCCAGTAGCCGTCGTGAGTCGTCGACGAAATTGTTTTTTTATGATGCGGCGACCGCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTg                                                      <  2:129017/143‑1 (MQ=255)                                                                                        gcgcCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGc                                                     <  1:62901/143‑1 (MQ=255)                                                                                          gcCGAGTACCTGGACAATCGTGCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAg                                                   <  1:172373/143‑1 (MQ=255)                                                                                              cttACCTCGCCACTCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGCGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGctct                                               <  1:143087/142‑1 (MQ=255)                                                                                              aTTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATTTCCTTTTAAAGCCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGctct                                               <  2:439040/143‑1 (MQ=255)                                                                                              aTTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGctct                                               <  1:900763/143‑1 (MQ=255)                                                                                                tACCTGGACAATCCTTCCAGTAGCCATTTGAAATCCCCTACGAATTAACCTTTTTAAGCCGCGGCGGCCACCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCttt                                             <  2:732726/143‑1 (MQ=255)                                                                                                   cTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACTAACTGCAGCTCTTTAAt                                          >  1:22086/1‑143 (MQ=255)                                                                                                   cTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAAt                                          <  1:744375/143‑1 (MQ=255)                                                                                                    tGGACAACCTTCCCCGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATc                                         <  1:28379/143‑1 (MQ=255)                                                                                                     ggACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGGCGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCa                                        >  1:131410/1‑143 (MQ=255)                                                                                                      taCAATCTTTCCTGTAGCCTTCTTAAATCCTCTACGTTTTTTTCTGTTAATGCCACGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAg                                       <  2:798265/142‑1 (MQ=255)                                                                                                      gtcgttCTTTCCAGTTGCCATCTTAATGCCTGTACGATTTTTTTTGTTAATGATACGGCGACCACCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAg                                       <  2:61482/138‑1 (MQ=255)                                                                                                      gtcAATCTTTCCAGTAGCCATCTGAAAGCCGCTACGAATTTTTTTTTTAATGCTGCGGCGGCCACCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAg                                       <  2:446936/141‑1 (MQ=255)                                                                                                         aaTCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGcg                                    >  1:398499/1‑142 (MQ=255)                                                                                                             tttCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAACGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTACTCAGGCTgccg                                >  1:46708/1‑143 (MQ=255)                                                                                                                ccAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGCGTTCCTGAGTAATGCTGGCCTGCCGAGCTTTGTTGTATACCAACTACAGCTCTTTAATCAGGCTCACGCCa                             >  2:773967/1‑143 (MQ=255)                                                                                                                 cAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCGACTGCAGCTCTTTAATCAGGCTGCCGCCAt                            >  1:830137/1‑143 (MQ=255)                                                                                                                     aGCCATCTTAAATCCTCTACGAAATAACCTGTTTAACCCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGCTGCCGCCATTgtc                        <  1:907613/143‑1 (MQ=255)                                                                                                                     aGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGCTGCCGCCATTgtc                        <  1:962886/143‑1 (MQ=255)                                                                                                                           cTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGCGTACTGCTTGCCTTACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTcgc                  <  1:650787/143‑1 (MQ=255)                                                                                                                            ttAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCATGAGTAATGCTGACCTGACGAGGTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGCTGGAGCCATTGTCGGTcgcg                 >  1:282308/1‑143 (MQ=255)                                                                                                                                    tctGCGAAGTTATCTGTTCAGGCCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCAt         <  2:618635/143‑1 (MQ=255)                                                                                                                                    tctACGAAATAACCTGTTTAAACAGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCATGACGAGCTTTGTTGTATACCAGCTGAAGCTATTTAATCAGGCTGCCGCCACTGTCGGTCGCGGCGTTCAt         >  2:376003/1‑143 (MQ=255)                                                                                                                                      tACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTCTAATCAGGCTGCCGCCAGCGTCGGACGAGGCCATCATCg       >  2:696941/1‑143 (MQ=255)                                                                                                                                       aCGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGc      >  1:1011563/1‑143 (MQ=255)                                                                                                                                           aaTAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGCTGCCGCCGTTGTCGGTGGCGGCTGTCATCgacgcc  >  1:1002440/1‑138 (MQ=255)                                                                                                                                           aaTAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGAAGAACTCCGGAGAAATGCTGCCCAGACGAGCTGTGTTGTATACCACCTGCGGCTCTTTAATCCGCCTGACGCAATCGACGCCCAAGACTCTCATCGccacc  >  2:522909/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                           AGCACCAGACGCTCATTACCATTTTGCACCTCAAGAGCATCGTACACGCGCGGTACGGCATCCTGAGGGAATTCGACGTCAACTACGGCGCCGATTACCTGGACAATCTTTCCAGTAGCCATCTTAAATCCTCTACGAAATAACCTGTTTAAACCGCGGCGGCCCCCGAGACGATCTCGGTGAGTTCCTGAGTAATGCTGGCCTGACGAGCTTTGTTGTATACCAACTGCAGCTCTTTAATCAGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACC  >  NC_000913/3917254‑3917534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑