Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,184,543 C→A P1100Q (CCG→CAG)  rpoB → RNA polymerase subunit beta

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,184,5430CA97.0% 314.9 / NA 102P1100Q (CCG→CAG) rpoBRNA polymerase subunit beta
Reads supporting (aligned to +/- strand):  ref base C (1/0);  major base A (52/46);  minor base G (0/3);  total (53/49)
Fisher's exact test for biased strand distribution p-value = 1.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 102 total aligned reads displayed.

TCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCA  >  NC_000913/4184403‑4184681
                                                                                                                                              |                                                                                                                                           
tCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACCACGTACTGAACCAGc                                                                                                                                           >  2:150990/1‑143 (MQ=255)
 cTGGCGGTTAACCGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTTACGGTAACAAGTGTGTAATTTTTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCt                                                                                                                                          <  1:623576/143‑1 (MQ=255)
       gTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATGTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGt                                                                                                                                    <  2:685367/143‑1 (MQ=255)
         tAAACGCCGTATCCAGCCTGGTGACAAGATGGCCGGTCGACACAGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTAc                                                                                                                                  <  2:1004426/143‑1 (MQ=255)
         tAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTAc                                                                                                                                  <  1:499436/143‑1 (MQ=255)
           aaCGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCg                                                                                                                                >  1:391180/1‑143 (MQ=255)
            aCGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGt                                                                                                                               >  1:926708/1‑143 (MQ=255)
               ccGTATCCAGCCTGGGGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGtctc                                                                                                                            <  1:362374/143‑1 (MQ=255)
                cgtaggcAGCCTGGTGACAAGAAGGCAGGTCGGCACGGTAACGAGGGTGGAATTTCGAAGATCAACCCGAGCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCg                                                                                                                           <  2:877390/137‑1 (MQ=255)
                cgctcctaGCCGGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACACCGATACTCAGCGTACTGAACCAGCTGGGCGTACCGTCTCg                                                                                                                           <  1:712361/136‑1 (MQ=255)
                 gTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGt                                                                                                                          <  1:390072/143‑1 (MQ=255)
                 gTATCCAGCCGGGTGACAGGATGGCAGGTCGCAAAGGCAACAAGGGTGTAATTTCTAAGATCAACCCGATGGAAGATATGCCTCACGATGCAAACGGGACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGt                                                                                                                          <  1:27870/143‑1 (MQ=255)
                  tATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGGGTACCGTCTCGTa                                                                                                                         >  2:314207/1‑143 (MQ=255)
                   aTCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTCGACATCGTACCGAACCAGCTGGGCCTACCGTCTCGTAt                                                                                                                        >  1:906787/1‑143 (MQ=255)
                    tCCAGACTGGTGAAAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAACTTCTAAGAGCAACCCGCTCGAAGATATGCCTTCCGATCAACACGGGACGCAGGTAGACATCGTACGGAACCAGCCGGGCGTACCGTCTCGTacg                                                                                                                       >  2:862728/1‑141 (MQ=255)
                      cAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTCCGCAGCAAAAC‑‑CGTACGCGTTACCAGCTGCGCGTACCGTCTCGTATGac                                                                                                                     >  2:454083/1‑142 (MQ=255)
                         ccgggTGACCAGATGCAAGGTCGTCACGGTAACAAGGGTGTGATGTCTAACATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACAt                                                                                                                  <  2:615474/140‑1 (MQ=255)
                           tGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAACATATGCCTCACGATGAAAACGGTACACCGGTAGACATCGTACTGAACCAGCTGGGCGGACCGCGTCGGATAAACATcc                                                                                                                >  2:90137/1‑142 (MQ=255)
                            ggggACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGGTGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCgg                                                                                                               <  2:482163/140‑1 (MQ=255)
                            ggTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCgg                                                                                                               >  1:423609/1‑143 (MQ=255)
                             gtcataaGATCGTATGTCTTCAGGGTAACATGGGTGCAAGTTCTAAGATCATCTCGAGTGTAGATATGCCTTACGATGACAGCGGCACGCCGGTAGACATCGTACTGACCCAGCTGGGTGTACCGTCTCGTATGAACATCGGt                                                                                                              <  2:550911/138‑1 (MQ=255)
                              tgccAAGATGGCAGGTCGTCATGGCAACAAGGGTGTAATTTCTACGTTCCTCCCTCTCGAGGATATGCCTGACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTc                                                                                                             <  2:840375/140‑1 (MQ=255)
                               gACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTCTGAACATCGGTCa                                                                                                            >  1:394303/1‑143 (MQ=255)
                                aCAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAg                                                                                                           >  2:866518/1‑143 (MQ=255)
                                  atgATGGAAGGTCGTCACGGTAACAAGGGTGTAATTTCGAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGAt                                                                                                         <  2:360172/141‑1 (MQ=255)
                                  aaGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGATACGCCGGTAGACATCGTACTGAACCAGATGGGCGTACCGTCACGTATGAACATCGGTCAGAt                                                                                                         >  2:93419/1‑143 (MQ=255)
                                   aGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATc                                                                                                        <  1:556504/143‑1 (MQ=255)
                                          aGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCGGAGCCTCGaaa                                                                                                 >  1:394542/1‑143 (MQ=255)
                                          aGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGaac                                                                                                 >  2:386551/1‑142 (MQ=255)
                                          aGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGaaa                                                                                                 <  1:544379/143‑1 (MQ=255)
                                           gggtgccACGTTAACAGGGGGGCAAGTGCTAAGATCGACCCGAGCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAAc                                                                                                <  2:491306/137‑1 (MQ=255)
                                            gtcgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGACCATCGGTCAGATCCTCGAAAcc                                                                                               >  1:296812/1‑143 (MQ=255)
                                             tcgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAAccc                                                                                              <  1:598944/143‑1 (MQ=255)
                                              cgtcACGCTAACAAGTGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCa                                                                                             <  1:895155/143‑1 (MQ=255)
                                               gtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGCCAGATCCTCGAAACCCAc                                                                                            >  2:878496/1‑143 (MQ=255)
                                               gtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTAGTATGAACATCGGTCAGATCATCGAAACCCAc                                                                                            >  2:28206/1‑143 (MQ=255)
                                                tcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCACCTGGGCGTACCGTCTCGTATGAACACCGGTCAGACCCTCGAAGCACAcc                                                                                           >  2:136774/1‑143 (MQ=255)
                                                 cgcGGTAACCAAGCTATAATCTCGAAGAGCCACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCt                                                                                          <  2:485832/141‑1 (MQ=255)
                                                 cACGGTAACAGGGGTGTAAGTTCTAAGATCAACCCGATCGAGGATGTGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCt                                                                                          <  1:862493/143‑1 (MQ=255)
                                                  aCGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTg                                                                                         >  1:175364/1‑143 (MQ=255)
                                                  aCGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTg                                                                                         >  1:817324/1‑143 (MQ=255)
                                                   cGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTgg                                                                                        >  1:969104/1‑143 (MQ=255)
                                                   cGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCCCGTCTGAAACTCTGACAGATCCTCGACACCCACCTgg                                                                                        >  2:210523/1‑143 (MQ=255)
                                                    ggTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTAAGCCGGTAGACATCGTACTGAACAAGCTGGGCGTACCGTCACGTATGAACATCAGTCAGAACCTCGACACCCAcagaga                                                                                       >  2:653687/1‑138 (MQ=255)
                                                    ggTAACAAGGGTGTAATTTCTAAGATCAAACCGATCGAGGATATGCCTTACGATGAAAACGGTACGCCGGGAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCCGATCCTCGAAACCCACCTggg                                                                                       <  1:764933/143‑1 (MQ=255)
                                                           aGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCt                                                                                <  2:199635/143‑1 (MQ=255)
                                                            gggTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTCCGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACACACCTGAGTATCGCTg                                                                               >  1:868951/1‑143 (MQ=255)
                                                                  aaTGTCTACGATCAACCCTATCGAAGATATGCCTTACGATGATAACGGTACGCCTGTAGACATCGTACTGAACCAGCTGGGCGTTCCGTCTCGTATGAACATCTGTCATATCCTCGAAACTCACCTGGGTATGGCTGCCAAAg                                                                         <  1:314775/143‑1 (MQ=255)
                                                                   aTTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGACAgg                                                                        >  2:92200/1‑143 (MQ=255)
                                                                    tttCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGt                                                                       <  2:74757/143‑1 (MQ=255)
                                                                     ttCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACAACGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCCCCTGGGTATGGGTGCGAAGGGtg                                                                      >  1:5005/1‑142 (MQ=255)
                                                                        tAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACCTCGGTCAGATCCTCGAAACCCCCCTGGGTATGGCTGCGGGAGGGATCg                                                                   >  1:128106/1‑143 (MQ=255)
                                                                        tAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCATACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGGAACCCCCATGGGGACGGCTGCGCAAGGGATcc                                                                   >  2:513848/1‑142 (MQ=255)
                                                                          aGATGAACACGATCGAAGATATGCCCTACGATGAAAACGGTACGCCGGTAGCCATCGTACGGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGc                                                                 <  1:885581/143‑1 (MQ=255)
                                                                           gATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCGGGGTATGGCTGCGGAAGGTATCGGCg                                                                >  1:250913/1‑143 (MQ=255)
                                                                            agcgaCCCGATCGGAGCTATGCTTTACGATGAAGACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGCCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGa                                                               <  2:1007072/139‑1 (MQ=255)
                                                                            aTCACCCCGATGGAAGATCTGCCTTACGATGAAAACGGTAGGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGa                                                               <  2:41077/143‑1 (MQ=255)
                                                                            aTCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGACCCTCGAAACCCACCTGGGTATGGCAGCGAAACGTACCGGCGa                                                               >  2:227353/1‑143 (MQ=255)
                                                                                aCCCTATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAg                                                           <  2:428276/143‑1 (MQ=255)
                                                                                  ccGATCGAAGATATGCCTTGCGAGGAAAGCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGAt                                                         <  2:394303/143‑1 (MQ=255)
                                                                                  ccGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACCAGAt                                                         >  1:1011163/1‑143 (MQ=255)
                                                                                  ccGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGAt                                                         <  1:170591/143‑1 (MQ=255)
                                                                                      tCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAAc                                                    <  1:305504/143‑1 (MQ=255)
                                                                                        gAAGATATGCCTTACGATGAAAACGGTAAGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCAACCCGGGTATGGCTGCGAAAGATATCGGCGACAAGAACAACGc                                                  >  2:418947/1‑143 (MQ=255)
                                                                                         aaGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGACAGGTATCGGCGACAAGATCCAACGc                                                  >  2:879437/1‑143 (MQ=255)
                                                                                          aGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGAGTACCGTCTCGCATGAACATCGGTCAGCTCCTCGAAACCCACCTGGGTATGGCTGCGACAGGTATCGGCGACAAGATCAACGCCa                                                >  1:286292/1‑143 (MQ=255)
                                                                                            atatGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATg                                              >  1:547144/1‑143 (MQ=255)
                                                                                              atGGCTTACTATGATAACGGTACGCCGGTGGACATCGTACTGAACCGGCTGGGCGTACCGTCTCGTATGAACAGCGGTCAGATCCTCGAAAACCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCt                                            <  2:84463/143‑1 (MQ=255)
                                                                                                gCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTGTCGGCGACACGATCGACGCCATGCTgc                                          >  1:249498/1‑142 (MQ=255)
                                                                                                  cTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGGACGTCGGTCAGATCCTCGAACCCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGaaa                                        <  2:684083/143‑1 (MQ=255)
                                                                                                    tACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAca                                      >  2:267446/1‑143 (MQ=255)
                                                                                                      ggATGAGGACGGGACGCCGGTGGACTGCGTACGGAGCAGGCTGGGCGTACCGTCTCGTATGAAGATCGGTCAGAGCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcagc                                    <  2:599313/142‑1 (MQ=255)
                                                                                                       gATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGGAAGGTCTCGGCGACAAGATCAACGCCATGCTGAAAcagca                                   >  1:611635/1‑143 (MQ=255)
                                                                                                       gATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcagca                                   <  1:627076/143‑1 (MQ=255)
                                                                                                       gATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCGCGTATGAACATCGGTCCGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcagca                                   >  1:871599/1‑143 (MQ=255)
                                                                                                       gATGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTCGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcagca                                   <  1:266576/143‑1 (MQ=255)
                                                                                                       gATGAAAACGCGACGCCTGTAGACATCGTCCTGACCCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGGATGGCTGCGAAAGGGATGGGCGACAAGATCAACGCCATGCTGAAAcagca                                   <  2:540085/143‑1 (MQ=255)
                                                                                                        aTGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCg                                                                                                                <  1:791208/66‑1 (MQ=255)
                                                                                                        aTGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCg                                                                                                                >  2:791208/1‑66 (MQ=255)
                                                                                                         tGAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTGGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGCAGGGTATCGGCGACAAGAGCAACGGCATGCTGAAACagcagc                                 >  2:859381/1‑143 (MQ=255)
                                                                                                          gAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGCCAAGATCAACGCCATGCTGAAACAgcagca                                >  1:880927/1‑143 (MQ=255)
                                                                                                          gAAAACGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGGCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAgcagca                                >  2:33421/1‑143 (MQ=255)
                                                                                                           aaaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGCATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaa                               >  2:545436/1‑143 (MQ=255)
                                                                                                            aaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaag                              <  1:654654/143‑1 (MQ=255)
                                                                                                            aaaCGGTACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAAGCATCGGCGACAAGGTCAACGCCATGCTGAACCCGCAGCcag                              >  2:274586/1‑143 (MQ=255)
                                                                                                            aaaCGGGACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGGCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaag                              <  2:132687/143‑1 (MQ=255)
                                                                                                                ggTACGCCGGTAGACATCATACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATACTCGAAACCCACCCGGGTATGAATACGAAAAGTATCGGCGACAAGATCAACACCAAGCGCAAACAGCAGCacgaaga                          >  2:497915/1‑142 (MQ=255)
                                                                                                                 gtgcGCCGGTATACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTc                         <  1:612304/140‑1 (MQ=255)
                                                                                                                    cGCCGGTAGACATCGTACTGAACCGGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTcgcg                      <  2:268230/143‑1 (MQ=255)
                                                                                                                    cGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACACCATGCTGAAACAGCAGCAAGAAGTcgcg                      <  2:919650/143‑1 (MQ=255)
                                                                                                                     gCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCGTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGACACAGCAGCaagaacgccgga                     >  2:781669/1‑136 (MQ=255)
                                                                                                                      ccGGTAGACATCCTTTGGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTCTGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGACGTCGCGaa                    >  2:374687/1‑143 (MQ=255)
                                                                                                                          tAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACCGCAGCAAGAAGTCGCGACACTg                >  1:270091/1‑143 (MQ=255)
                                                                                                                             aCAGCGTACTGAACCAGGGGGGCGGACCGTCTCGTATGAACATCGGGCAGAGCCGCGAGACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcgc             <  2:557867/143‑1 (MQ=255)
                                                                                                                                gagtgcTGAACCAGCTGGGCGTACCGCCTCTTATGAGCATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGaa          <  2:744026/138‑1 (MQ=255)
                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAAt         <  2:1023282/143‑1 (MQ=255)
                                                                                                                                 cGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAAt         <  2:586134/143‑1 (MQ=255)
                                                                                                                                   tACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCACGAAGTCGCGAAAGTGagcggggac       >  1:471219/1‑138 (MQ=255)
                                                                                                                                        gAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAGGGTATCGGCGACCCGATCAACGCCATGCTGAACCAGCAGCAAGAAGTCGCGAACCTGAGCGAATTCATc  >  1:34240/1‑142 (MQ=255)
                                                                                                                                          aaCCAGCTGGGCGTACCGTCACGTATGAACATCGGTCAGAACCTCGAAACCCACCTGGGGATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCCGCAAGAAATCGCGGAACAGCGCGCAATCATCCa  >  2:427920/1‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                           
TCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCA  >  NC_000913/4184403‑4184681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: