| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,956,975 | G→T | 100% | H11Q (CAC→CAA) | torZ ← | trimethylamine N‑oxide reductase 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,956,975 | 0 | G | T | 100.0% | 59.9 / ‑6.7 | 22 | H11Q (CAC→CAA) | torZ | trimethylamine N‑oxide reductase 2 |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base T (11/10); total (11/11) | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
AAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGT > NC_000913/1956836‑1957092 | aaccAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTttgt < 1:359957/140‑1 (MQ=255) ccGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTc > 1:184729/1‑143 (MQ=255) ttCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTa > 1:313423/1‑143 (MQ=255) tCTACGTTCATCGCTCCCCAGCGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTaa < 1:465915/143‑1 (MQ=255) cTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTAAt < 1:213962/143‑1 (MQ=255) cTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAACACCGCTTTGTTTAATAAATTCACATCCTggcaat > 2:23853/1‑138 (MQ=255) cGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCTGTGATCGGTGCTGCCGATGTCCCCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTAATgac > 1:306596/1‑141 (MQ=255) ccAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGGTGTCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTccc > 1:180435/1‑143 (MQ=255) cAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGCTGTCACCACCAGCGCTCCAGCGGCAATACCCCTTTGTTTAACAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCt > 2:353451/1‑143 (MQ=255) cGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGAt < 2:184729/143‑1 (MQ=255) cGTCCCGCGGTGAGGATGTTCCCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGAt < 2:228608/143‑1 (MQ=255) ccGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCCCCACCAGCGCTCCAGCGGCAATACCGCTTTGTTGAATAAATTCACGCCTTGCTAATGTCATAACTTCCTCCCTGATCAAc > 2:2850/1‑143 (MQ=255) tGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCCCCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAGTTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGAt < 1:452376/143‑1 (MQ=255) tGAGGATGTCACCGCCCGTCTCTGCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACTGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGag < 2:61993/143‑2 (MQ=255) gATTTTACCGCCCTGCTCTCCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACt < 2:203950/143‑1 (MQ=255) ctgCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCCCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTtctc < 1:143407/141‑1 (MQ=255) cGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCACTACCGCTTTGTTTAATAAATTCACGGCTTGGTAATGTCATAACTTCCTCTCTGGTCACCGAGGATCACGGttccccg > 2:140209/1‑138 (MQ=255) cATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTAATGTCCTAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATGTATTTGGTGtt < 1:488669/143‑1 (MQ=255) gAGCGGTGCTGCCGATGTCACCACCAGCGCGCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGGTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGa < 1:160940/143‑1 (MQ=255) gAGCGGTGATGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGa < 1:72406/143‑1 (MQ=255) ccGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAACAGCTTTGGCGTTGTACTGGAAATACCGCGtt > 2:54201/1‑143 (MQ=255) tCACCACCAGCGCTCCAGCGGCAATACCGCTTTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATg > 1:421155/1‑143 (MQ=255) ccaGCGCTCCAGCGGCAATACCGCTTTGTTTAATACATTCACGTCTTGCTAATGTCATAACTTCGTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGGTCTACCTCGTTAAAATGTACAGt > 1:155751/1‑143 (MQ=255) | AAACAATCTTGCCGTCCTTCACTTCTACGTTCATCGCTCCCCAACGTCCCGCGGTGAGGATTTTACCGCCCTTCTCTTCTGCCCATGCGGGGAGCGGTGCTGCCGATGTCACCACCAGCGCTCCAGCGGCAATACCGCTGTGTTTAATAAATTCACGTCTTGTTAATGTCATAACTTCCTCCCTGATCAACGAGGATCACTGTTTCTCGGTAATATCTTTGGCGTTGTACTGGAAATACCGCGTTAAAATGTCCAGT > NC_000913/1956836‑1957092 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |