Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 1,785,179 | A→T | I645N (ATC→AAC) | ppsA ← | phosphoenolpyruvate synthetase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,785,179 | 0 | A | T | 96.1% | 134.6 / NA | 53 | I645N (ATC→AAC) | ppsA | phosphoenolpyruvate synthetase |
Reads supporting (aligned to +/- strand): ref base A (1/0); major base T (16/33); minor base G (2/0); total (20/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.20e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGAACTGCTCGGCCAGCAAGGCGTTGGACGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGATCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGAAACATAGCGGCCCGCGCCACGGAAGCCGAGCATCGGGTTCTC > NC_000913/1785039‑1785312 | ggcaCTGCTCGGCCAGCACGGCGTCGGACGCGATTTCACACATCCTTATTAGTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTc < 2:31067/140‑1 (MQ=255) tGCTCGGCCAGCAAGGCGTTGGCCGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGAt < 1:636366/143‑1 (MQ=255) gCTCGGCCAGCAAGGCGTTGGACGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCCCCAGTTCTGCAGTCGCCGCTTTCGCCTGCTCCACGGGACGCACGCACCGGCTCACGagc > 2:992061/1‑141 (MQ=255) cGGCCAGCAAGGCGTTGGACGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCa > 1:117771/1‑143 (MQ=255) cGGCCAGCAAGGCGTTGGACGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCa < 2:471679/143‑1 (MQ=255) ggCCAGGAAGGCGTTGGACGGGATTTCACACATCAGGATGATTTTCAGCCCGTTCTCGCTACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCaa < 2:564639/143‑1 (MQ=255) ggCCAGCAAGGCGTTGGACGGGATTTCAAACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGCACGCACGAACGGGTTAATGATCTCaa > 2:597875/1‑143 (MQ=255) ccAGCAAGGCGTTGGACGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCCCGAACGGGTCCATGACCTCCAcc > 2:655585/1‑142 (MQ=255) tcgagccGTGGGACGGGATTTCACACAGCATGATGATTTTCCGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTg < 1:661340/137‑1 (MQ=255) gCAAGGCGTTGGACGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACTGTACGCACGAACGGGTTCATGATCTCAACGTTg < 2:514769/143‑1 (MQ=255) cAAGGCGTTGGACGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGGTCATGATCTCAACGTTgg > 1:664726/1‑143 (MQ=255) gTTGGACGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGCTCTACGTGTCGCACGAATGGGTCTCTTATCTCCTCGTTGGGCAGta > 1:98051/1‑142 (MQ=255) gACGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGATCATGATCTCAACGTTGGTCAGTCCCag > 2:26900/1‑142 (MQ=255) aCGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTGTCGCCTGATCTACGCTACGCACGAACGGGGTCATGATCTCACCGTTGGTCAGTCCCATg > 1:253305/1‑143 (MQ=255) acacaTCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGca > 1:1051311/1‑143 (MQ=255) cacaTCATAATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGcac < 1:118472/143‑1 (MQ=255) acaTCATGATGATTTGCAGCCCGTTCTCGCCACGTTTCAGGCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGcaca < 1:1042753/143‑1 (MQ=255) atgatgATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGttt < 2:117771/143‑1 (MQ=255) ctcactttCCGCCCGTTCTCGCCACGTGTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCAc < 2:962652/138‑1 (MQ=255) ttCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTTAACCACCTCTTTCGCCTGATCTACGGTACTCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTc < 2:785557/143‑1 (MQ=255) aGCCCGTTCTCGCCACGTCTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTcaca < 1:297489/143‑1 (MQ=255) cccGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTCCGATACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGGTTCACTGCTTCACACt > 2:573888/1‑143 (MQ=255) ccGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTc < 1:340004/143‑1 (MQ=255) ctcGCCAGGTTTCAGCCACTGCCGCGCCAGTTAGTCAACCGACGCTTCCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGGCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAgag < 1:1095805/143‑3 (MQ=255) tcGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGt < 2:1113738/95‑1 (MQ=255) tcGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGt > 1:1113738/1‑95 (MQ=255) tcGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAgcgc < 1:214877/143‑1 (MQ=255) gCCACGTTTCCGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGa < 2:415224/143‑1 (MQ=255) ccACGTTTCAGCCCCTGACGCGCCAGTTCGTCAACCACCGCTTTCGCCTGATCTAGGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGGCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGaa < 2:369899/143‑1 (MQ=255) ttCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTc < 2:774114/143‑1 (MQ=255) ttCAGACCCTTCCTCTCCCGTTCTTCAACGCCCGCTTTCGCCTGTTCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTc < 2:1043616/143‑1 (MQ=255) cAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGAGCTACGGTACGCCCGAACGGGTTCATGATCTCAACGTTGGTTAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTcgc < 2:570393/143‑1 (MQ=255) cAGCCCCTGACGCGCCAGTCCTTCAACCCCCGCTTTCGCCTGAACTACGGTACGCACGGACGGGTTCATGATCGCAACGTCGGTCAGTCCCACGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTcgc < 2:866578/143‑1 (MQ=255) ccTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGCACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCGTCACACTCCAGCGCGACACCGCCGCGGagg > 2:780217/1‑141 (MQ=255) tcgcgCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGt < 2:195704/142‑1 (MQ=255) aCGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACGCCAGCGCGAAACAGTCGCGGAAGCTGt < 2:476627/143‑1 (MQ=255) gcCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGa > 2:359309/1‑143 (MQ=255) cAGTTCTTCAATCACCGCTTTCGCTCGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTGGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGaaa < 2:968000/143‑1 (MQ=255) gTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACCCCAGCGCGACACAGTCGCGCACGCTGCCGGAAACa > 2:1145100/1‑143 (MQ=255) gTTCTTCAACCACCGCTTTCGCCTGATCGACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGAAACa < 1:937659/143‑1 (MQ=255) cttcAACCACCGCTTTCGCCCGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGAAACATAg < 1:341587/143‑1 (MQ=255) tcAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGAACCATcgcg > 1:12940/1‑143 (MQ=255) accGCTTTCGCCTGATCTAAGGAACGAACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGCCGTTGCGCACACCTTTCACTGCTTCACACCACAGCGCCAAACAGCCACGGCAGCTCTCGGAAAACCAGCGGCCcgc > 2:201867/1‑143 (MQ=255) ttCGCCTGGTCTGCGGTCCGTCGGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCTTGTCGTTGCGCACACGTTTCCCGGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGAAACATAGCGGCCCGCGCCACg < 2:630768/143‑1 (MQ=255) gATCTACGGTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACATTGCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTAGGAGACATAGCGGCCCGCGCCACGGAAGCCg > 2:681904/1‑143 (MQ=255) cGGTACGCACGAACGGGTTCCTGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGGTTCACACTCCAGCGCGGAACAGTCGCGGAAGCTGTCGGAAACATAGCGGCCCGCGCCACGGCAGCCgcgactc > 2:536211/1‑137 (MQ=255) tttacttaCGAACGGGTTCACGAGCTCAACGCTGGCCCGCCCCATGCCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGAAACATAGCGGCCCGCGCCACGGAAGCCGAGCATCg < 1:597875/136‑1 (MQ=255) ggTACGCACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCCCTGCTTCACACTCCACCGCGAAACAGTCGCGGAAGCTGTCGGAAACACCGCGGCCCGCCCCACGGAAGCCCAGCATCg > 1:796224/1‑143 (MQ=255) cGCACGAACGGGTTCTCGTTCTCAACGTTGGTCAGTCCCCTGTCGTTGCGCACACGTTTCACTGCTTCACCCCCCAGCGCGAAACAGTCGCGGAAGCTGTCGGAAACATAGCGGCCCGCGCCACGGAAGCCGAGCATCGGGtt < 2:878182/143‑1 (MQ=255) cgcggccGGGTTCATGCTCTCATCGTTGGTCTGCCCCATGTCGTTGCGCACACGTTTCACTGCTTCACCCTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGAAACATAGCGGCCCGCGCCACGGAAGCCGAGCATCGGGTtct < 2:354906/137‑1 (MQ=255) cACGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGAGAGCTGTCGGAAACATAGCGGCCCGCGCCCCGGAAGCCGAGCATCGGGttac > 2:85525/1‑141 (MQ=255) aCGAACGGGTTCATGATCTCACCGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGAAACATAGCGGCCCGCGCCACGGAAGCCGAGCATCGGGTtctc < 1:799098/143‑1 (MQ=255) aCGAACGGGTTCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGAAACATAGCGGCCCGCGCCACGGAAGCCGAGCATCGGGTtctc < 2:265248/143‑1 (MQ=255) | GGAACTGCTCGGCCAGCAAGGCGTTGGACGGGATTTCACACATCATGATGATTTTCAGCCCGTTCTCGCCACGTTTCAGCCCCTGACGCGCCAGTTCTTCAACCACCGCTTTCGCCTGATCTACGGTACGCACGAACGGGATCATGATCTCAACGTTGGTCAGTCCCATGTCGTTGCGCACACGTTTCACTGCTTCACACTCCAGCGCGAAACAGTCGCGGAAGCTGTCGGAAACATAGCGGCCCGCGCCACGGAAGCCGAGCATCGGGTTCTC > NC_000913/1785039‑1785312 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |