mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.6% | 134.2 / 86.9 | 139 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 57 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1425331 | 145 (2.280) | 6 (0.100) | 6/272 | 7.3 | 4.2% | intergenic (+92/‑46) | trkG/ynaK | Rac prophage; K(+) transporter TrkG/Rac prophage; ParB‑like nuclease domain‑containing protein YnaK |
| ? | NC_000913 | = 1425343 | 133 (2.180) | intergenic (+104/‑34) | trkG/ynaK | Rac prophage; K(+) transporter TrkG/Rac prophage; ParB‑like nuclease domain‑containing protein YnaK | |||||
| * | ? | NC_000913 | 225078 = | NA (NA) | 6 (0.100) | 6/270 | 7.3 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | 3948426 = | 127 (2.000) | 6 (0.100) | 5/266 | 7.7 | 5.0% | intergenic (+2/+23) | maoP/yifB | macrodomain Ori protein/putative magnesium chelatase YifB |
| ? | NC_000913 | 3948449 = | 107 (1.800) | coding (1521/1521 nt) | yifB | putative magnesium chelatase YifB | |||||
| * | ? | NC_000913 | 4326252 = | NA (NA) | 7 (0.120) | 5/270 | 7.8 | NA | noncoding (1/34 nt) | other | REP325j |
| ? | NC_000913 | 4326280 = | NA (NA) | noncoding (29/34 nt) | other | REP325j | |||||
| * | ? | NC_000913 | 4326152 = | NA (NA) | 7 (0.120) | 5/270 | 7.8 | NA | noncoding (1/34 nt) | other | REP325h |
| ? | NC_000913 | 4326280 = | NA (NA) | noncoding (29/34 nt) | other | REP325j | |||||
| * | ? | NC_000913 | 4325952 = | NA (NA) | 7 (0.120) | 5/270 | 7.8 | NA | noncoding (1/34 nt) | other | REP325d |
| ? | NC_000913 | 4326280 = | NA (NA) | noncoding (29/34 nt) | other | REP325j | |||||
| * | ? | NC_000913 | 4325852 = | NA (NA) | 7 (0.120) | 5/270 | 7.8 | NA | noncoding (1/34 nt) | other | REP325b |
| ? | NC_000913 | 4326280 = | NA (NA) | noncoding (29/34 nt) | other | REP325j | |||||
| * | ? | NC_000913 | = 4171625 | 38 (0.600) | 5 (0.080) | 5/272 | 7.9 | 12.1% | intergenic (+81/‑12) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4213004 | NA (NA) | intergenic (+58/‑36) | rrlE/rrfE | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4171607 | 34 (0.530) | 8 (0.130) | 5/272 | 7.9 | 19.7% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4040481 | NA (NA) | 5 (0.080) | 5/272 | 7.9 | 17.3% | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4040505 | 25 (0.390) | intergenic (+82/‑12) | rrlA/rrfA | 23S ribosomal RNA/5S ribosomal RNA | |||||