Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | NC_000913 | 3,815,859 | Δ82 bp | 100% | [rph] | [rph] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 3815859 | 3815940 | 82 | 48 [0] | [1] 50 | [rph] | [rph] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3815858 | 0 (0.000) | 43 (1.660) | 38/244 | NT | 100% | intergenic (‑90/+5) | pyrE/rph | orotate phosphoribosyltransferase/truncated RNase PH |
? | NC_000913 | 3815941 = | 0 (0.000) | coding (609/687 nt) | rph | truncated RNase PH |
CCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3815707‑3815858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT > NC_000913/3815941‑3816082 CCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGGTATGGTTTCATTCCTTCGCTCATCATCTTACTATTCTACAAACAAAAAAAAAGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCC > 1:167378/1‑143 TTAACACGTGCTTGTTAAGCGCAAATTCAATAAACTGGCGTTGATATGTTTTCATGCCTTCTCTCCTCATCTTACGTATCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCT < 1:45744/143‑1 TTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCGTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCT < 2:518475/143‑1 TTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCATCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTCAAAATCAGTTTGCCAGAGCCGCATTCT > 2:213049/1‑143 ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCC < 1:193696/143‑1 TGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCC < 2:152091/143‑1 TTGTTAAGCGAAAATTCAATAATCTGGCGCTGATATGGTTTCATGCCTTCGCTCTTCATCTTACTTTTCAACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTG < 1:502416/143‑1 CTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTATCTACAAACAAAAAAAAAAAGACAAATCA‑ATCACCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCAC > 1:508910/1‑143 AAGCGCAAATTCAATAAACTGGCGCTGAAATAGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑ATCACCTTAAAAATCAGTTTGCAAGGGCCGCCATCTGCCGTACACTGGACTT > 2:6019/1‑143 CAATAAACTGGCGCTGATATGGTTTCATGTCTTCGCTCTTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACGCATCA‑GTCGACTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGC < 1:186629/143‑1 AATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCg > 1:260845/1‑142 TAAACTGGCGCTGATATGTTTTCATGTCTTCGCTCCTCATCTTACAGTTCTACAGACAAAAAAAAGGCGACGCAGCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCG < 1:162289/143‑1 GGCGCTGAGATGGCTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCG < 2:472895/143‑1 CGCTGATATGGTTTCATGCCTTCGCTTCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGT < 1:9530/143‑1 CGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTTCATACAATATATAGGCGTCTCATCA‑GTCGCCTTAAAAATCAGGTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGT < 1:19590/143‑1 TGGTTTCATGCCTTCGCTCCTATAGTTGCGTGTCGACAGACATAAAAAATGTGTCTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTA < 1:513875/143‑1 TTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCAACA‑GTCGGCTTAAAAATCAGTTTGACAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCACGACTTCGGTCACCACTcctg > 2:508540/1‑139 TCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAACAAGGCGACTCATCA‑GTCGCCTTAAAAATCCGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTACACTTCAATGATGCGCCCGTCCTCGGACCTCACCACGccc > 2:173696/1‑140 gcgTTCGCTGCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCAGCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGT < 2:143850/140‑1 CTTCGCTCCTCATCTTACTTTTATACAGACAAAATAAAGGCGTTTCATCA‑GTCGCCTTAAAAATCAGTTGGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAAGGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCG < 1:192095/143‑1 TTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTCACAAAAAAATAACCAACGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATACACCCGTCTTCGATCATCACTACGTTCATGTCGG > 1:75576/1‑143 TCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCACTGATGCGCCCGTCTTCGCTCATCCCCACGCTCATGGCGCTCcca > 2:327426/1‑140 CTCATCTTACTTTTCTATTTACAAAAAAAAGGCTACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGC < 1:364390/143‑1 TCATCTTACTTTTCTACAGACAAAAAAAAGGCTACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCG < 1:394072/143‑1 ccTTTCTACGGACGAAAAAAAGGCGACTCACGAGGTCGAC‑CAGAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCTCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTC < 2:112284/141‑1 TTTTCTACAGACAAAAAAAAGGCGACTCATCG‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTTCCCTGCACTTCAATCATGCGCCCGACTTCGGTCATCACTACGTCCATGACGGACTCTGCGGCAGAGACT > 1:441736/1‑143 TTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATTATGCGCCCGTCTTGGGCCACCACCACGTTCATTTCGGTCCCTGCGGCAGAGTCT > 2:243639/1‑143 TTCTACATACTAAAGAAAGGCGATTCATCA‑GTCGCCTTAAAAATCAGTTCGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTC < 1:378101/143‑1 TCTATACACAAAAAAAAGGCGACTCACCA‑GCGGCCTGAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCA < 1:72949/143‑1 TCTACACACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCA < 2:245179/143‑1 TACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATTATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAC > 1:186966/1‑143 ACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACG > 1:487535/1‑143 CAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGATTACAAGCGCCGCCTTCTGCGGTTCCCTGCCCTTAAATGACGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCCGCGGCAGAGTATTCAAAGT > 2:8178/1‑143 ACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGCTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCACGTCTTCGGTCATCACTACGTTCATGTCGGTCACTGCGGCAGAGTCCTCCACGTATg > 2:446695/1‑142 CAAAAAAAAGGCGCCTCATCA‑GTCGCCTTAAAAATCATGTTGCCGGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTC < 2:389396/143‑1 AAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCCTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGACATCACTACGTTAATGTCGGTCTCTACGGCAGAGTCTTCAACGTATTCCAGA > 1:263649/1‑143 agAAGGCGACTCATCA‑GTCGCCTTAAAACTCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTTCGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAT < 2:40945/141‑1 AAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCAGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAT < 2:360130/143‑1 GCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTATACAGAAATCACTACGTTCATGTCGGTCTATGCGGCAGAGTCTTCAACGTATTCCAGATCGCAA > 1:333474/1‑143 CATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCCATGATGCGCCCGTCTTCGGTCATCACTACATTCATGTCAGTATATACAGAAAAGTCTTCAACATATTCCAGATCACAAACCGCT > 1:454709/1‑143 GCCTTGAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGATCATGTCGATCTCTGCGACAGAGTCTCAAACGAATTCCAAATCGGAAACACGTTCGCCGTT > 2:477811/1‑143 GCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTTCACTTTTATGATGCGTCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCGGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTT < 1:195290/143‑1 CCTTAAAAATCAAGTCACCAGTGCCGTCTTCTGCCGTCCCCTGCACTTCACTGATGCGCCCGTCTTCGCTCATCACAACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTC < 2:158415/143‑1 CTTAAACATCAGTTTGCCCGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCA < 2:440865/143‑1 AATCAGTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACATTAATGTCGTTCTCTGCGGCAGAGTCTCCAACGTATTCCAGCACGCAAACAGCTTCGCCGTCCCCAATac > 2:339008/1‑141 GTTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGACTTCAACGTATTCCAGATAGAAAACCACTTCGCCGTTCACAATTCCGACA > 1:262919/1‑143 TTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCACTGCTGCGCCCGTCTTCGGTCATCACTAAAAACATGTAAATCTCTGCAGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAG > 1:36660/1‑143 TTTGCCAGCGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGTGTCTTCAACGTATTCCAAATTACAAACCCCTTCGCCGTTCACAATTCTGACAG > 1:82213/1‑143 CGCCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGCTCTCTGCGGCAGAGTCTTCAACGTATTCAAGATCGCAAACCGCTTCGCCGTTAACAATTCCGACAGAAACTGag > 1:34818/1‑141 CCGCCTTCTGCCGCCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGCTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGCAACTGCGtc > 1:405858/1‑141 GCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAAGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCTGACAGAAACTGCGGCTA > 1:38825/1‑143 CCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCTTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT < 1:367437/143‑1 CCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCA‑GTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3815707‑3815858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCT > NC_000913/3815941‑3816082 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |