New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1437207	38 (1.350)	3 (0.110)	3/250	NT	7.9%	noncoding (87/109 nt)	micC	small regulatory RNA MicC
	?	NC_000913	= 1437217	34 (1.280)					noncoding (97/109 nt)	micC	small regulatory RNA MicC

ATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTC  >  NC_000913/1437067‑1437344                                                                                                                                             |                                                                                                                                           atacatacAAAATAAATATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGaa                                                                                                                                          <  1:358935/143‑1 (MQ=255) atacatacAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGaa                                                                                                                                          >  1:273185/1‑143 (MQ=255)   acatacaAAATAAAAATTATTCTTTTAATTTGCTATACGTTATTCTGCTCTGGTTATATGCCTTTATTGTCACAGATTTTGTTTGCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACa                                                                                                                                        <  1:138309/143‑1 (MQ=255)      tacaAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATACAAAGACAAGCCCGAACAttc                                                                                                                                     >  2:524273/1‑143 (MQ=255)       acaAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATACCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAGAAGAACAGGCCGCACAgacg                                                                                                                                    >  2:319256/1‑143 (MQ=255)         aaaaTAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGCTTTTATTTTCTGTTGAGCCATTGCATTTCCACTGATTTTCCAACATATAAAAAGACAAGCTCGAACAgtcgtc                                                                                                                                  >  1:198805/1‑143 (MQ=255)              aaaaaTTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCcgggc                                                                                                                             <  2:299746‑M2/143‑6 (MQ=255)                aaaTTATACTTTTTATTTGCTTTACGTTATTCTACGCTGGTTATATCTCTTTTTTGTCACAGATTTTATTTTCTGTTCGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGgacgactgttcgggctt                                                                                                                           <  2:199151‑M1/143‑18 (MQ=255)                aaaTTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAACGACAAGCCAGAACAGTCGTCcgggctt                                                                                                                           <  2:12335‑M2/143‑8 (MQ=255)                 aaTTATACTTTTAATTTGTTATACTTTATTCTTCTCTGTTTATATCCCTTTATTGTCACATATTTTATTTTCTGTTGGGCCATTGCATTGCCACTTATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑Cttt                                                                                                                         <  1:562293/143‑1 (MQ=255)                   ttgtaCTTTTAATGTTCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTTTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCTACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑Cttttt                                                                                                                       <  2:81153/140‑1 (MQ=255)                   ttATACTCTTAATTTGCTATACGTTATTCTGCGCGGGTTAGATGCCGTGATTGTCACAGATTTTATTTGCTGTGGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑Cttttt                                                                                                                       <  1:39690/143‑1 (MQ=255)                       aCTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATAGTTCGACCTGTTATGCTGTACCAATAACATACTCGGCCACTGATTTTCCTACATATAAAAAGACAAGCACAAAAAGTCGTCCGGG‑Cttttttttt                                                                                                                   >  1:578515/1‑143 (MQ=255)                        cTTTTAATTTGCTATACGTTATTCTGCGCGGTTTATATGCCTTTATTTTCTCAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTa                                                                                                                  <  1:309261/143‑1 (MQ=255)                        cTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTa                                                                                                                  <  1:281238/143‑1 (MQ=255)                                    tataCGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTCATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGAAAAGACCGAACAGTAGTCAGGG‑CTTTTTTTTAAGAATTGaataat                                                                                                      >  1:22364/1‑143 (MQ=255)                                     ataCGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATCAACAGACACGCCCGAACTGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATc                                                                                                     >  1:123150/1‑143 (MQ=255)                                         gTTATTCTGTGCGGGTTATATGCCTTTATTGTCACAGATATTATTTTCTGTTGGGCCATGGCATTGCCGCTGGTTGTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTa                                                                                                 <  1:200090/143‑1 (MQ=255)                                          ttATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCCCTGATTTTCCAACATATAAAAAGACAAGCCCGACCAGTCGTCCGGC‑CTTTTCTTTTTAAATTGCATAATCATTAt                                                                                                >  1:102290/1‑143 (MQ=255)                                              tCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTAACCaa                                                                                            >  1:560582/1‑142 (MQ=255)                                                 gtgttgtttatatgtcTTTATTGTGACAGATTGAATAAACAGGTGGGCCATTGAGTTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGgacgactgttcgggcttgtctttttatatgttggaaaatcagtggcaatg                                                                                          <  1:358982‑M1/136‑51 (MQ=255)                                                 gcgcGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTGTTAAAATTGGATAATCCTTATCCAGAGc                                                                                         >  1:544445/1‑143 (MQ=255)                                                     gggTTATATTCCTTTATTGTCACAGATTTTATTTTCTGTGAGGCCATTGCATGGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGgacgactgttcgggcttgtctttttatatgttggaaaatcagtggcaatgcaat                                                                                      <  1:82920‑M1/143‑55 (MQ=255)                                                        ttATATGCCTTTATTGTCATAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCAttaatc                                                                                  <  2:46583/143‑5 (MQ=255)                                                         tataTGCCTTTATTGGCACAGATTTTTTTTTCTGTTGGGTTATTGCATTGTCTTTTTTTTTCCAATATATAAAAAGACAAGACGGAACAGGCGGCGGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATc                                                                                 <  1:322960/143‑1 (MQ=255)                                                              gCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTATTTTTTAAGAATTGGATAATCATAATCCAGAGCATTTAATCGgtgt                                                                            >  1:470917/1‑143 (MQ=255)                                                                cTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGA‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGgtgtgg                                                                          >  1:441280/1‑141 (MQ=255)                                                                   tATTGGAACACATTTTATTTTCTGTTGAGCGATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCtt                                                                       <  2:522541/143‑1 (MQ=255)                                                                         cacaGATTTTATTTTCTGTTGGGCCCTTTCTTTGCCACTTATTTTCCAACATATAAAAAGACAAGCCCGAACAGACGGCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTcc                                                                 <  1:436348/143‑1 (MQ=255)                                                                          acaGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACCTATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTGTAGAATTGGGTCATCCTTCTCCCCACCATTTAATCGGTGTTCCTTTTTTCCg                                                                >  2:214873/1‑143 (MQ=255)                                                                          acaGATTTCATTGTCTGTTGGGCCATTGCATTGCCACTGAGTGTCCAACATATAAAAAGACAAGCCCGAACAGTCGGCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCg                                                                <  2:40021/143‑1 (MQ=255)                                                                            ttattttgttttCTGTTGGGATATTTCATCGCCACTGGTTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTGTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCt                                                              <  1:315522/141‑1 (MQ=255)                                                                            aGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCt                                                              <  1:315359/143‑1 (MQ=255)                                                                                 ttattttCTGTTGGTCCAGTGCATTGCCACTGATTTTTCAACATATTTATATATAAGCACGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTcc                                                         <  1:143934/143‑1 (MQ=255)                                                                                          gTTGGGCCATTTCATTGCCACTGTTTTTCCAACATATAAATAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTtg                                                <  1:91586/143‑1 (MQ=255)                                                                                                  attgcattgcCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCcgggcttgtctttttatatgttggaaaatcagtggccatgcaatggcctcacagaaaataaaatctgtgacaataaaggaatataaccc                                         <  1:82920‑M2/143‑90 (MQ=255)                                                                                                      cattgcCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCcgggcttgtctttttatatgttggaaaatcagtggcaactcaatggcccacctgtttattcaatctgtcacaataaagacatataaacaacac                                     <  1:358982‑M2/143‑94 (MQ=255)                                                                                                          gcCACTGATTTTTCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAg                                <  1:299746/143‑1 (MQ=255)                                                                                                             aCTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGAAGATGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGt                             >  1:17964/1‑143 (MQ=255)                                                                                                               tGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATACTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCAGCCATTTGTTCCAGGCAGTCATAGCGttt                           >  2:287072/1‑143 (MQ=255)                                                                                                                   tttCCAATCTAGACAAAGACAAGCTCGAACAGTCTTCCGTG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCATTGCATTTAATCGGTGTTTCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGc                       <  2:135524/143‑1 (MQ=255)                                                                                                                     tCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTTCGGCTCTTTGTCCCAGTCATTCATATCGCTTTTGCaa                     >  2:172704/1‑143 (MQ=255)                                                                                                                       cAACATATAACAAGACAATCGTGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATGTAATCGGTGTTGCTTTTTTCCGCTTTGCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAAt                   <  2:374773/143‑1 (MQ=255)                                                                                                                          tatatAAAAAGACAAGCTTGATTTGTTTTCCGGGTTTTTTTTTTTAAAATTTGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCa                 <  1:573737/142‑1 (MQ=255)                                                                                                                          cATATAAAAAGACAAGCCCGATCAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAg                <  1:531089/143‑1 (MQ=255)                                                                                                                           atatAAAAAGACATGCCCGTACTGTCGTCCGGT‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCACTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGc               <  2:302703/143‑1 (MQ=255)                                                                                                                            tgtaAAGAGACTAGCTCGAACAGTCGTCATCG‑CTTTTTTTTTAGAATTGCATAATCCTTTTCTAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGTCATGTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCt              <  2:192831/141‑1 (MQ=255)                                                                                                                                   tgACATGCCCGTTCTGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATATTCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCAt       <  1:359200/142‑1 (MQ=255)                                                                                                                                       aaGCCCGgacgactgttctggcttgtcgttttatatgttggaaaatcagtggcaatgcaatggcccaacagaaaataaaatctgtgacaataaaggcatataacccgcgcagaataacgtatagcaaattaaaagtataattt    <  2:12335‑M1/143‑137 (MQ=255)                                                                                                                                       aaGCCCGAACAGTCGTCcgggcttgtctttttatatgttggaaaatcagtggcaatgcaatggccgaacagaaaataaaatctgtgacaaaaaagagatataaccagcgtagaataacgtaaagcaaataaaaagtataattt    <  2:199151‑M2/143‑127 (MQ=255)                                                                                                                                         gCCCGgacgactgttcgggcttgtctttttatatgttggaaaatcagtggcaatgcaatggcccaacagaaaataaaatctgtgacaataaaggcatataacccgcgcagaataacgtatagcaaattaaaagtataattttt  <  2:299746‑M1/143‑139 (MQ=255)                                                                                                                                             |                                                                                                                                           ATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGG‑CTTTTTTTTTAGAATTGGATAATCCTTATCCAGAGCATTTAATCGGTGTTGCTTTTTTCCGCTTTTCCGGCCATTTGTGCCAGGAAGTCATAGCGTTTTTGCAAATCAGCTGCAGCATCTTTC  >  NC_000913/1437067‑1437344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.