| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1899959 | 26 (0.930) | 3 (0.110) | 3/252 | NT | 10.8% | coding (1533/1599 nt) | pdeD | putative c‑di‑GMP phosphodiesterase PdeD |
| ? | NC_000913 | = 1899964 | 25 (0.930) | coding (1538/1599 nt) | pdeD | putative c‑di‑GMP phosphodiesterase PdeD | |||||
ACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGCTTACTCATCTTCATCGTGCGCCGGTTGCTCTTTAACAATGCGAACCAGATCAACACGATAATCATTGGCTTCAATGA > NC_000913/1899824‑1900105 | aCTGAATATTTAACTGGTGGCGTAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTAGTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGca > 1:194608‑M2/1‑141 (MQ=255) tGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTACCAAAAGGCTGGCGGGcagc < 2:230707‑M2/143‑5 (MQ=255) ggaAGATGGAACGGGTGGCGGGGGGGGGGGAAAGGGAAGAACAGGCGAAGTAGGTGCGCGGTCATGGCGTGCATATTTTGCAAGGGTATGTGGACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGcagc > 1:322103‑M2/2‑139 (MQ=255) tGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAAccgc > 2:176153/1‑143 (MQ=255) attggtggCGGAGGGCGTGGAAACGCAAGAACAGTCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACcgccgc < 1:395567/141‑1 (MQ=255) tggCGGTGTGCGTGGATTCGTAAGAACAGGCGAAGTAGCTGGGCAGTCGTCACGATCATATTTTGCAATGCTATTTGGACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCcgcccgcc < 1:548634/143‑1 (MQ=255) cGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATATTGCAAGGCTATTTGTACGCACAGCCGACGCCGCTACGTGATTTTCCCAAATGCCTGGCGGGCAGCCAACCGCCGCCCGCCCgg > 2:33996/1‑143 (MQ=255) tGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATGTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGACAGGCAAAAtcgc > 2:200156/1‑140 (MQ=255) gCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGAGGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGGCCGGCATAATGGACATATCa > 2:98478/1‑143 (MQ=255) aaGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACg > 1:525908/1‑143 (MQ=255) aGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTCGTACGCACAGCCGGTGCCGCTACGTGATCTTCCCGAATGGCTGGCGGGCAGCCAACAGCCGGCCGCCCGGCGTCATGGACAGCTCAGGCACAtg > 2:290996/1‑142 (MQ=255) aGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGAATTCGGACGCACAGCCGATGCCGCTCCGTGATTTTCCCCCATGGCTGGCCGGCAGCCACCCGCCGCCCGCCCGGCATAATGCACATATCACGCCCCtt > 1:234821/1‑143 (MQ=255) agCGAAGAATTTGCGCCGTCATGGCGTGCATATTTTGCAAGTGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTa < 1:42487/142‑1 (MQ=255) gAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGCTTTTCCCCAATGGCTGGCGGGCAGCCAACCCCCGCCCGCCCGGCATAATAGACATAACACGCCCATTATGc > 1:377952/1‑143 (MQ=255) gAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGCTTTTCCCAAATGCCTGGCGGGCAGCCAACCGCCGCCCGCACGGCATAATGGACATATCACGCCCATTAttc > 1:328420/1‑141 (MQ=255) gTGCATATTTTGCAAGTGTATTTGTACGCACAGCCGATGCCGTTTCGTCCTTCTCCCAAATGGTTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGCTTACTCAt < 1:548644/143‑1 (MQ=255) atTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGGCAACCACCGCCCGCCCGGCATAATGGACATAGCACGCCCGTTATGCCGTTACGTTCACGCTTACTCGTCTTCac > 1:494736/1‑142 (MQ=255) aGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCCTAATGGCCCTATCCCGCCCCTTATGCCGTTACGTTCACGCTTACTCATCTTCATCGTgcgac > 1:53653/1‑141 (MQ=255) aGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGCTTACTCAGCTTCATAGTgagca > 1:50681/1‑142 (MQ=255) cGCACAGCCGATGCCGCTACGTGATTTTCCCAAAGGGCTGGCGGGCAGACAACCGCCGTCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGCTTACTCATCTTCATCGTGCGCCGGTTGCTCTTTa < 2:540591/143‑1 (MQ=255) gCACAGCCGATGCCGGTGCGGTATTTTCCCAACTGGCTGGCTGGCAGCCAGCTGGCGCGCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGCTTACTCATCTTCATCATGCGCCGGTTGCTCTTTaa < 2:31299/143‑1 (MQ=255) acaGCCGATTCCGCTACGTTTTTTTACCAAATGTCTGTCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGCTTACTCATCTTCATCGTGCGCCGGTTGCTCTTTAACa < 1:522515/143‑1 (MQ=255) aGCCGATTCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACTTTTCTCGCTTATTATGCCGTTACGTTAACGCTTACTCATCTTCATCGTGCGCCGGTTGCTCTTTAACAAt < 1:55517/143‑1 (MQ=255) cttcGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGCTTACTCATCTTCATCGTGCGCCGGTTGCTCTTTAACAATGCGAACCAGAt < 2:8485/140‑1 (MQ=255) tACGTGATTTTCCCAAGTGGCTGGTGGGTAGCTAACCGTCTCCCGCACTGCATAATGGACATATCACGCCCATTATGCCGTGACGTTAACGCTTACTCATCTTCATCGTGCGCCGGTTGCTCTTTAACAATGCGAACCAGATc < 1:58999/143‑1 (MQ=255) cGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGTTCGTTCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGCTTACTCATCTTCATCGTGCGCCGGTTGCTCTTTAACAATGCGAACCAGATCaa < 1:176153/143‑1 (MQ=255) tttCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACAGATCACGCCCATTATGCCGTTACGTCAACGCTTACCCCCCTTCATCGTGCCCCGCTCCCTCCTTAACATTGCCAACCAGATCAACACGac > 1:203322/1‑142 (MQ=255) ttCCCAAATGGCTGGCGAGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGGTTGCTCATCTTCATCGTGCGCCGGTTGCTCTTTAACAATGCGAACCATATCAACACGATa > 2:62571/1‑143 (MQ=255) ccAAATGGCTGGCGGGcagccatttgggaaaatcacgtagcggcatcggctgtgcgtacaaataccctt > 1:127423‑M2/1‑16 (MQ=255) ccAAATGGCTGGCGGGcagccatttgggaaaatcacgtagcggcatcggctgtgcgtacaaataccctt < 2:127423‑M2/69‑54 (MQ=255) cAAATGGCTGGCGGGcagccatttgggaaaatcacgtagcggcatcggctgtgcgtacaaatacccttgcaaaatatgcacgccatgacggcgcaaatacttcgcctgttcttgcgtttccacgccctccgccaccagttcaa < 1:453782‑M2/143‑129 (MQ=255) cAAATGGCTGGCGGGCAGGTAACCGCCGCCCGACCGGCATAATAGACATATCACGCCCATTATGCCGTTACGTTAACGCTTACTCATCTTCAACGTGCGCCGGTCGCTCGTTAACAATGCGAACCAGATCAACACGATAATCa < 1:193445/143‑1 (MQ=255) ggcaggcagttgggagaatcagggaggggcatcggtcgtgcgtacaagtccccttgcgaaatatgcacgccatgacggcgcaaatacttcgcctgttcttgcgtttccacgccctccgccaccagttcaatattcagtctttg > 2:342135‑M2/1‑2 (MQ=255) | ACTGAATATTGAACTGGTGGCGGAGGGCGTGGAAACGCAAGAACAGGCGAAGTATTTGCGCCGTCATGGCGTGCATATTTTGCAAGGGTATTTGTACGCACAGCCGATGCCGCTACGTGATTTTCCCAAATGGCTGGCGGGCAGCCAACCGCCGCCCGCCCGGCATAATGGACATATCACGCCCATTATGCCGTTACGTTAACGCTTACTCATCTTCATCGTGCGCCGGTTGCTCTTTAACAATGCGAACCAGATCAACACGATAATCATTGGCTTCAATGA > NC_000913/1899824‑1900105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |