| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,361 | 0 | C | . | 90.9% | 166.1 / 8.2 | 44 | pseudogene (918/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component |
| Reads supporting (aligned to +/- strand): ref base C (2/2); new base . (14/26); total (16/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
| * | NC_000913 | 2,173,362 | 0 | C | . | 95.2% | 164.6 / 2.8 | 44 | pseudogene (917/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base . (14/26); minor base G (0/2); total (16/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGT > NC_000913/2173236‑2173496 || ggCGACCGCCATCGCCACGAAGAAGCGGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCcagca < 2:408230/143‑1 (MQ=255)ggCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCcagca < 1:692952/143‑1 (MQ=255) cGACCGTCATCGCCACGAGGAAGTCGATTGTGGTAAGATCGCCAAACGGCAGCACCTGAGTACCCGGCACACAAACAGCAATTACAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCagcagc < 1:860443/143‑1 (MQ=255) cGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACg > 2:976372/1‑143 (MQ=255) cGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGAAGAAAAATCAGGCTTGCCGATA‑‑ACACCGCCGTATGTCCCAGCAGCAACg > 2:848531/1‑143 (MQ=255) aTCGCTACGAAGAAGCCTATGGTTGAAAGATCGCCAAACGGCAGCACCGGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCgg < 1:855803/143‑1 (MQ=255) gcGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGa < 2:501159/142‑1 (MQ=255) cGCCACGAAGACGCCGATGGCGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCACTTAAAATGGGGAGTGGGATAAAACTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGAt < 2:31352/143‑1 (MQ=255) cACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGACAGCACCGTATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTAGGTCCCAGCAGCAACGCCGGATCaa > 2:855574/1‑143 (MQ=255) aCGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGCTAAAAATCAGGCTTGCCTATACGA‑‑ACGCCGTCAGCCCCCTCAGCAACGCCGGATGAAg > 2:383593/1‑143 (MQ=255) cGAAGAAGCCGATGGGGGCAAGGTCGCCAAACGGCAGCACCTGATTACCCGGCACACAACCAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAgg < 2:822395/143‑1 (MQ=255) acgagCCGCTGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATAC‑‑CGCCGCCGTATAAAGCACTATGTACGCCGGATCAAGGCCa < 2:859367/140‑1 (MQ=255) aagCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTCCCCGGCACACAAACAGCAATTACAATGGTGAGTGGGATCAAAATCAGGCTTGCCGATACAACCC‑‑ACTTGTTTGCCGGCAGCAACGCCGGATCCGGGCCCAt > 1:760042/1‑143 (MQ=255) agCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑c < 2:84374/143‑1 (MQ=255) agCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑c < 2:84469/143‑1 (MQ=255) agCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑c < 2:518842/143‑1 (MQ=255) gggtggtggCAAGATCGCGAAACGGCCACACCTGGTGACCCGGCACACAAGCAGCAATTAAAATGGTGAGTGGGATAAAAGTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAgg < 2:846192/140‑1 (MQ=255) gCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATAGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCCGCCGCACCGCCGGACCAAGGCCAAA‑CCTGAACCCCTg > 1:169780/1‑143 (MQ=255) cacgATCGCTAAACGGCCCCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTCAGTGGGATAATAAGCAGGCTTGCCGCTACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGa < 2:853932/140‑1 (MQ=255) cAAGAGCGCCAAACGGCAGCTGCGGATGCCCCGGCACACAAACAGCAATTAAAAGGGTGAGTGGGATAAAAACCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGa < 2:56095/143‑1 (MQ=255) gATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATCCGA‑‑GCGTCGCAGGGCCCAGCAGCCACGCCGGATCAAGGCCGAT‑CAGGCACTCCTGAccg > 1:712525/1‑143 (MQ=255) aCGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTc < 2:635493/143‑1 (MQ=255) cGGCAGCACCTGATTCCCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCg < 1:171774/143‑1 (MQ=255) ggCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGc < 2:885109/143‑1 (MQ=255) cagcaCCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCt < 1:976372/143‑1 (MQ=255) aCCTGATTACCCGGCCCACAAACAGCAATTAACATGGTGAGTGGCATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCACCAACGCCGGGTCCAGGCCAGT‑CAGGCACTCCTGACCGCCGCCCTTCCCCTGTaa > 2:447513/1‑143 (MQ=255) ctgagaaCCCGGCACACAAACAGCAATTACAGTGGTGAGTGGGATAAAAATCAGGCTTGCCGCTACCA‑‑CCGCCGGATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCATGACCGCCGAACTTCGCCTGTAAAc < 1:116592/137‑1 (MQ=255) ttACCCGGCAGACAAGCAGCAATTAAAATGGTGAGTGGGGTAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACt < 2:722888/143‑1 (MQ=255) ccGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCATGACCGCCGAACTTCGACTGTAAACGACTACGa > 1:703547/1‑143 (MQ=255) ccGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCAGATACCA‑‑CCGCCTTATCTACCAGCAGCAACGCCAAATCAAAACCAAT‑TCGGCACTCCTGAAGCCCGAACTCCGACTGTAACCGACTagag > 2:563452/1‑140 (MQ=255) acacaAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGGCTACGAGCCTg > 1:299690/1‑143 (MQ=255) tacaAACACCTATTAATATCGTGCGTCGCATCAAAACCAGGCTCTCCGATACCA‑‑CCGCCGTATGTCCCAGCACCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGc < 1:144734/142‑1 (MQ=255) acaAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCGGCGACGCCGGATCAAGGCCAAT‑CCGGTACTCCCACCCGCCGCACTTCTCCTGTAACCGACTACGAGCCTGCt > 2:107812/1‑143 (MQ=255) acaAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCt > 2:725773/1‑143 (MQ=255) cgccAGCTATTAAAATGGTCAGTGGGATAAAAATCAGGCTTGCCCATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTa < 2:369615/140‑1 (MQ=255) gCAATTAAGATGGTGAGGGGTATAAAAATCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGCCCAAT‑CAGGAACTCCTGACCGCCGAATTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt < 2:557691/143‑1 (MQ=255) aaTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATgg < 1:855574/143‑1 (MQ=255) tGGGGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGGATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa < 2:681667/143‑1 (MQ=255) atatctCAGGCTTGCCGCTAC‑‑CGCCGCCGTATGTCCCAGCAGCATCACCGGATCAAGGCCAAT‑CAGGATCTCCTGACCGCCGATCTTCGCCTGTAAACGACTACGAGCCTGCTTAGCCATGGGCGTTAAACCATCCATGATgg < 2:630862/138‑1 (MQ=255) tCAGGCTTGCCGATACCA‑‑CCGCCGACTGTCCCAGCAGCAACGCCCGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTa < 1:812737/143‑1 (MQ=255) cAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCCGAACCGCCGGATCAAGGCCAATCCCCGAACGTTTCATATCC‑AATTGTAACAGTACGCGAAGCCGCACGTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTaa < 1:718686/143‑1 (MQ=255) aGGCTTGCCGATACCA‑‑CCGCCGTATGTGCCAGCAGCAACGCCGGATCAAGGCCAAT‑CCGGCACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCCTAGCGATGGGCGTTAAACCATCCATGCTGGGTTTAAt > 2:539213/1‑143 (MQ=255) cTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CCGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGCTGGGCGATAAACCATCCATGATGGGTTTACTCAc > 2:589792/1‑143 (MQ=255) ccGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGt > 1:620325/1‑143 (MQ=255) || GGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAAT‑CAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGT > NC_000913/2173236‑2173496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |