Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,287,424 +T intergenic (‑53/‑340) acs ← / → nrfA acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,287,4231.T94.4% 322.4 / 10.4 107intergenic (‑52/‑341)acs/nrfAacetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase
Reads supporting (aligned to +/- strand):  ref base . (3/3);  new base T (54/47);  total (57/50)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 111 total aligned reads displayed.

ATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCT  >  NC_000913/4287281‑4287564
                                                                                                                                                 |                                                                                                                                              
aTTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGCTTGTGAATTTGGCTCATGCTTGTGTTCTCCTTGTAGGACGTTGATAATATGTGGCATAAGCGTTAAATg                                                                                                                                                 >  2:946826/1‑143 (MQ=255)
   gttgATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCCATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGtta                                                                                                                                             <  1:234324/143‑3 (MQ=255)
     tgATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGttagg                                                                                                                                           <  1:866412/143‑5 (MQ=255)
       aTACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAgggg                                                                                                                                         >  1:343162/1‑143 (MQ=255)
         aCATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGGTAGGGGTa                                                                                                                                       >  1:290052/1‑143 (MQ=255)
            tCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTg                                                                                                                                    >  1:725940/1‑143 (MQ=255)
               gcgggTACTGCTGAGGGTTTGTCAGGCAGCGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCGTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCa                                                                                                                                 <  2:658269/139‑1 (MQ=255)
                cTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAg                                                                                                                                >  2:122852/1‑143 (MQ=255)
                      ctgctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGt                                                                                                                          <  2:370908/143‑1 (MQ=255)
                      ctgctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGt                                                                                                                          <  1:716736/143‑1 (MQ=255)
                       tgctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGtt                                                                                                                         <  1:105643/143‑1 (MQ=255)
                         ctgAGGGTTTATCAGGCAACGGTCTGCGCTGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTa                                                                                                                       <  1:637652/143‑1 (MQ=255)
                         ctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTGTCCTTGTAGGATGTTAATAATATGTGGCTTAGGCGTTAAATGTTAGGGGGATTGGTAGTTTTGtagg                                                                                                                       >  2:739296/1‑140 (MQ=255)
                          tgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCATGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAg                                                                                                                      >  2:698802/1‑143 (MQ=255)
                          ggAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAg                                                                                                                      <  2:624363/142‑1 (MQ=255)
                            aGGGTTTATCAGGCAACGGTCTGCGATGTTGGGAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTa                                                                                                                    >  2:511323/1‑143 (MQ=255)
                              ggTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTAtt                                                                                                                  >  1:570105/1‑143 (MQ=255)
                              ggTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTAtt                                                                                                                  <  2:787048/143‑1 (MQ=255)
                               gTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTAttt                                                                                                                 <  1:402718/143‑1 (MQ=255)
                               gTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTAttt                                                                                                                 >  2:670915/1‑143 (MQ=255)
                               gTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTAttt                                                                                                                 >  1:233557/1‑143 (MQ=255)
                                tttATCAGGCGACGGGCTGCGATGGTGGCAGGAATGGTGTGTTTGTGTATAGTGCGCATGCTTTTGTTCTCTTGGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTg                                                                                                                <  2:204837/143‑1 (MQ=255)
                                 tgagcAGGCGACGGTGTGCGATGTTGGCAGGGGTGGTGTGTGTGGGAAGTTGGCGCATGCTTTTGTTCTCCGTGTAGGATGTGAATAATATGTGGCATAAGCGTTGAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTgg                                                                                                               <  1:446719/139‑1 (MQ=255)
                                  taccAGGCAACGGACCGCGATGGTGGCAGGAATGGTGTGATTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTTAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTggg                                                                                                              <  1:294369/140‑1 (MQ=255)
                                  tATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGGTTTGTTTAGTATTTggg                                                                                                              >  1:411194/1‑143 (MQ=255)
                                    tCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTCGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTCGTTTAGTATTTGGGCg                                                                                                            >  2:871321/1‑143 (MQ=255)
                                          aaCGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGAt                                                                                                      >  2:226638/1‑143 (MQ=255)
                                               tCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGc                                                                                                 >  1:503697/1‑143 (MQ=255)
                                                      tggttgCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTa                                                                                          <  1:753213/138‑1 (MQ=255)
                                                      tGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTGAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTa                                                                                          >  1:562000/1‑143 (MQ=255)
                                                          ggCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTGTTTGGGCGACAGATCACGCAAAAGTAGAAt                                                                                      >  2:365881/1‑143 (MQ=255)
                                                          ggCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAAt                                                                                      >  2:446196/1‑143 (MQ=255)
                                                              ggAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGATAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAGGTAGAATtgtg                                                                                  >  2:370677/1‑143 (MQ=255)
                                                               gAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGGAAAAGTAGAATtgttg                                                                                 >  2:929182/1‑141 (MQ=255)
                                                                    gtgtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAACGTAGAATTGTGCAAATa                                                                            >  2:761805/1‑143 (MQ=255)
                                                                    gtgtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATa                                                                            >  1:536449/1‑143 (MQ=255)
                                                                     tgtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATaa                                                                           >  1:882273/1‑143 (MQ=255)
                                                                               aaTTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGATTTGTGCAAATAAACGGCAGGGt                                                                 >  1:35475/1‑143 (MQ=255)
                                                                               aaTTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGt                                                                 >  2:21370/1‑143 (MQ=255)
                                                                                     gCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTGGAATTGTGCAACAAAACGGCGAGGAAAtttt                                                           >  2:794714/1‑143 (MQ=255)
                                                                                      cttaTGCTTTTGTTCGCCGTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAAttttt                                                          <  1:308181/140‑1 (MQ=255)
                                                                                      ctctTGCTTTTTTTCTCCTTGTAGGATGTTTATAATATGTGGCATAAGCGTTAAATGTTAGGGGTCATGGCAGGGTTGTTTCGTATTTGGGCGACAGATCACGCAAAAGTAGAATTTTGCAAATAAACGGCAGGGTAAttttt                                                          <  2:590628/143‑1 (MQ=255)
                                                                                      cTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAACAGTAGAATTGTGCAAATAAACGGAAGGGTAAttttt                                                          >  2:57844/1‑143 (MQ=255)
                                                                                       tCATTCTTTTGTTCTCCTTGTAGGATGTTGATAATGTGTGGCATAAGCGTTAGATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTg                                                         <  2:767226/143‑1 (MQ=255)
                                                                                       tCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTg                                                         >  1:261344/1‑143 (MQ=255)
                                                                                        cATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGa                                                        <  1:67971/143‑1 (MQ=255)
                                                                                        cATGCTTTTGTTCTCCTTGTAGGATGTTAATAAGATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGa                                                        <  2:545125/143‑1 (MQ=255)
                                                                                        cATGCGTTTGTTCTCCTGGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTCCAAATAAACGGCAGGGTAATTTTTGa                                                        <  2:933777/143‑1 (MQ=255)
                                                                                         atgagtttGTTCTCTTTGTAGGAGGGTCATAATATGTAGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGaa                                                       <  2:281983/138‑1 (MQ=255)
                                                                                         aTGCTTTTGTTCTGCTTGTAGGATGTTCATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGaa                                                       <  2:373483/143‑1 (MQ=255)
                                                                                          tGCTTTTGTTCTCCTCGTAGGATGTTCATAATATGCTGCATAAGCGTTACATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAg                                                      <  1:236409/143‑1 (MQ=255)
                                                                                             ttttGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGTCAATAAACGGCAGGGTAATTTTTGAAAGTc                                                   >  1:372998/1‑143 (MQ=255)
                                                                                              tttGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCa                                                  <  2:562000/143‑1 (MQ=255)
                                                                                                tGTTCTCCTTGTAGTATGTTAATAATATGTGGCACAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAga                                                <  1:170069/143‑2 (MQ=255)
                                                                                                tGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGc                                                <  1:945525/143‑1 (MQ=255)
                                                                                                 gTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAg                                                                    <  1:435477/122‑1 (MQ=255)
                                                                                                 gTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAg                                                                    >  2:435477/1‑122 (MQ=255)
                                                                                                  ttCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCCGcaa                                              >  1:776380/1‑143 (MQ=255)
                                                                                                  ttCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaa                                              >  1:353714/1‑143 (MQ=255)
                                                                                                    ctcCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaaca                                            >  1:818965/1‑143 (MQ=255)
                                                                                                     tcCTTGTAGGATGTTAATAATATCTGGCATAAGCGTTATATATTAGGGTTATTGTCAGTTTTGTTTAGTATATGGCCGACAGATCAAGCAAAACTAGACATGTTCAAATACACGGCAGGCCAATAGTTGAAGATCAGcaacac                                           >  2:581144/1‑142 (MQ=255)
                                                                                                       cTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACaaaa                                         >  1:484622/1‑143 (MQ=255)
                                                                                                       cTTGGAGTATGTTAGTAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACaaaa                                         <  2:328097/143‑1 (MQ=255)
                                                                                                         tttAGGATGTTAATAATATGTGGCATAAGTGTTAAGTGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGt                                       <  2:924501/141‑1 (MQ=255)
                                                                                                         tggaGGATGTTAATAATGTGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGt                                       <  1:804332/140‑1 (MQ=255)
                                                                                                         tGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGt                                       <  1:39959/143‑1 (MQ=255)
                                                                                                           ttggATGCTGATAATATGTGGCATAAGCGTTGAATTTTACGGCTAGTGTGAGCTTTGTTTAGTATTTGGGCGACAGATCACTCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTg                                     <  2:639576/141‑1 (MQ=255)
                                                                                                           tAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGCAGGTCAGCAGCAAAAGTTg                                     >  1:17609/1‑143 (MQ=255)
                                                                                                           tAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTg                                     >  1:751254/1‑143 (MQ=255)
                                                                                                           tAGGATGTTAATAATAGGTGGCATAAGCGTTAAACGTTAGTGTTTTTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTg                                     <  1:131933/143‑1 (MQ=255)
                                                                                                            aGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGa                                    <  1:342485/143‑1 (MQ=255)
                                                                                                              gATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTAGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGAtc                                  >  2:906603/1‑142 (MQ=255)
                                                                                                                 gTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTGATTTTTGAAGGTCAGCAACAAAAGTTGATTAAt                               >  1:485753/1‑143 (MQ=255)
                                                                                                                 gTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAAt                               >  1:749821/1‑143 (MQ=255)
                                                                                                                 gTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAAt                               >  2:769813/1‑143 (MQ=255)
                                                                                                                  ttAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAACTTGAAGAAtt                              >  2:323703/1‑143 (MQ=255)
                                                                                                                  ttAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATGTTTGAAGGTCAGCAACAAAAGTTGATTAAtt                              >  1:661818/1‑143 (MQ=255)
                                                                                                                    aataatATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCt                            >  1:572641/1‑143 (MQ=255)
                                                                                                                    aataatATGTGGCATAAGCGTTAAATGTTAGGGGGATTGGCAGTGTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGACTAATTCt                            >  2:3399/1‑143 (MQ=255)
                                                                                                                     ataataTGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGTTGGGTCGCCCAAAACTAGGATTTTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCtt                           <  1:452509/143‑1 (MQ=255)
                                                                                                                     agagtatGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAGGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCtt                           <  2:854212/139‑1 (MQ=255)
                                                                                                                      tgatatGGGGCATAGGGGTTAAATGTGAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCttt                          <  2:261344/141‑1 (MQ=255)
                                                                                                                      tactctgtgGCAGAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCttt                          <  1:128038/138‑1 (MQ=255)
                                                                                                                      taataTGTGGCATAAGCTTTAAATGTTAGGGGTATTTGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCttt                          <  2:85406/143‑1 (MQ=255)
                                                                                                                      taataTGTGCGGTATGCGTTAAATGTTAGGGGTTTTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCttt                          <  2:188520/143‑1 (MQ=255)
                                                                                                                      taacaTCTGTCATAAGCGTTACATGTTAGGGGTATTGGAAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCttt                          <  2:674477/143‑1 (MQ=255)
                                                                                                                         gcggtgGCATAAGGGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGGTAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAg                       <  2:354253/140‑1 (MQ=255)
                                                                                                                            gtgGCATAAGCGTTAAATGTTGGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGaa                    <  1:475471/143‑1 (MQ=255)
                                                                                                                               gCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACAt                 >  1:677401/1‑143 (MQ=255)
                                                                                                                                 aTAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACagga               >  2:823869/1‑140 (MQ=255)
                                                                                                                                 aTAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGc               >  1:773059/1‑143 (MQ=255)
                                                                                                                                  tAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCa              >  1:877992/1‑143 (MQ=255)
                                                                                                                                  tAAGCGTGAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCa              <  2:30430/143‑1 (MQ=255)
                                                                                                                                   aaGCGTTAAATGTTAGGGGTATTGGCAGTGTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAg             <  1:956496/143‑1 (MQ=255)
                                                                                                                                       ggtAAATGTTAGGGTTATTGGCAGTTTTGTTTAGTATTTGTGCGACAGATCACTCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTat         <  2:559793/141‑1 (MQ=255)
                                                                                                                                       gTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAACAGTTGATTAATTCCTTGAGGAACATGCCGTTat         >  1:58720/1‑143 (MQ=255)
                                                                                                                                       gTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTat         <  1:957132/143‑1 (MQ=255)
                                                                                                                                       gTTAAATGTTAGGGGTATTGGCAGTTTTGTATCGTAAAGGTTCGACAGATCACGCAAAAGTAGAAGTGTGCAAATATACGGCAGAGTAATTTTTGAATGTCAGCAACAAAAGATGATTAATTCTTTGAGGAACATGCAGTTat         >  2:116752/1‑143 (MQ=255)
                                                                                                                                        ttAAATGTTAGGAGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTatg        <  1:60027/143‑1 (MQ=255)
                                                                                                                                               ggTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCt  <  1:881540/142‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                              
ATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCT  >  NC_000913/4287281‑4287564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: