mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.1% | 87.6 / 79.4 | 107 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 62 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4304575 = | 91 (1.680) | 10 (0.200) | 6/260 | 5.8 | 10.2% | intergenic (‑172/+37) | ytcA/yjcS | putative lipoprotein YtcA/alkyl sulfatase |
| ? | NC_000913 | 4304603 = | 92 (1.840) | intergenic (‑200/+9) | ytcA/yjcS | putative lipoprotein YtcA/alkyl sulfatase | |||||
| * | ? | NC_000913 | 1417458 = | 106 (1.960) | 7 (0.140) | 6/262 | 5.8 | 6.6% | intergenic (‑72/+30) | recE/racC | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC |
| ? | NC_000913 | 1417483 = | 100 (1.990) | intergenic (‑97/+5) | recE/racC | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific/Rac prophage; protein RacC | |||||
| * | ? | NC_000913 | 4295980 = | NA (NA) | 10 (0.190) | 6/268 | 6.0 | NA | noncoding (32/37 nt) | other | REP321c |
| ? | NC_000913 | 4296288 = | NA (NA) | noncoding (1/37 nt) | other | REP321i | |||||
| * | ? | NC_000913 | 4295980 = | NA (NA) | 10 (0.190) | 6/268 | 6.0 | NA | noncoding (32/37 nt) | other | REP321c |
| ? | NC_000913 | 4296175 = | NA (NA) | noncoding (1/37 nt) | other | REP321g | |||||
| * | ? | NC_000913 | 4295949 = | NA (NA) | 10 (0.190) | 6/268 | 6.0 | NA | noncoding (1/37 nt) | other | REP321c |
| ? | NC_000913 | 4295980 = | NA (NA) | noncoding (32/37 nt) | other | REP321c | |||||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 7 (0.140) | 6/270 | 6.0 | 28.9% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 4038811 | 18 (0.330) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 7 (0.140) | 6/270 | 6.0 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 227052 | 31 (0.570) | 7 (0.140) | 6/270 | 6.0 | 19.1% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4431298 | NA (NA) | 7 (0.140) | 5/262 | 6.3 | NA | noncoding (9/25 nt) | other | REPt333 |
| ? | NC_000913 | = 4431303 | NA (NA) | noncoding (14/25 nt) | other | REPt333 | |||||
| * | ? | NC_000913 | = 3786895 | 100 (1.850) | 5 (0.100) | 5/262 | 6.3 | 5.1% | coding (58/1260 nt) | envC | murein hydrolase activator EnvC |
| ? | NC_000913 | = 3786902 | 93 (1.850) | coding (65/1260 nt) | envC | murein hydrolase activator EnvC | |||||