Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,287,423:1 +T 100% intergenic (‑52/‑341) acs ← / → nrfA acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,287,4231.T95.1% 242.7 / 4.3 82intergenic (‑52/‑341)acs/nrfAacetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase
Reads supporting (aligned to +/- strand):  ref base . (2/2);  new base T (39/38);  total (41/41)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Frequency below/above cutoff threshold.

ATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGC  >  NC_000913/4287281‑4287559
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aTTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATg                                                                                                                                             >  1:315017/1‑143 (MQ=255)
      gATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGttaggg                                                                                                                                      >  1:130592/1‑138 (MQ=255)
       aTACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGGTGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAgggg                                                                                                                                    >  2:548772/1‑143 (MQ=255)
            tCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTg                                                                                                                               >  2:17719/1‑143 (MQ=255)
            tCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGAATAAGCGTTAAATGTTAGGGGCATTg                                                                                                                               >  2:296801/1‑143 (MQ=255)
            tCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGATGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTCTGTTCTCCTTGTAGGACGTTACTAATATGTGGCATAAGCGTTAAATGTTAGGGGAATTg                                                                                                                               >  2:302325/1‑143 (MQ=255)
                    gtcgggggAGGTTTTATCAGGCGGCGGTGTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTGGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGtttt                                                                                                                       <  2:267929/136‑1 (MQ=255)
                        gctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTTAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGttt                                                                                                                   <  1:407938/143‑1 (MQ=255)
                        gctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGttt                                                                                                                   >  1:158464/1‑143 (MQ=255)
                        gctgAGGGTGTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGCATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGttt                                                                                                                   <  1:200436/143‑1 (MQ=255)
                         ctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATACTATGTGGCATAAGCGTTAAATGTTGGGGGTATTGGCAGTTTTGTTTa                                                                                                                  >  2:235099/1‑143 (MQ=255)
                         ctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTa                                                                                                                  >  1:347135/1‑143 (MQ=255)
                           gAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGt                                                                                                                >  2:118423/1‑143 (MQ=255)
                               gTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTAttt                                                                                                            >  1:244220/1‑143 (MQ=255)
                                     catgCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCGCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGa                                                                                                      <  2:10022/140‑1 (MQ=255)
                                       ggCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGGATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACa                                                                                                    <  1:315519/143‑1 (MQ=255)
                                       ggCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACa                                                                                                    >  1:468135/1‑143 (MQ=255)
                                          aaCGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGAt                                                                                                 <  1:445304/143‑1 (MQ=255)
                                           aCGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATc                                                                                                <  1:574472/143‑1 (MQ=255)
                                            cGGTCTGCGATTTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCa                                                                                               <  2:203509/143‑1 (MQ=255)
                                            cGGTCTGCGATGTTTGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCa                                                                                               <  1:105705/143‑1 (MQ=255)
                                            cGGTCGGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCa                                                                                               <  2:466213/143‑1 (MQ=255)
                                                 tGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACGGATCACGCaa                                                                                          >  1:39607/1‑143 (MQ=255)
                                                 tGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCaa                                                                                          >  2:320185/1‑143 (MQ=255)
                                                   cGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCaaaa                                                                                        >  2:531938/1‑143 (MQ=255)
                                                    gATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTAATGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAg                                                                                       >  1:222994/1‑143 (MQ=255)
                                                     aTGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGGTGTTAATACTATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCACAAGt                                                                                      >  1:267263/1‑143 (MQ=255)
                                                      tGTTGGCAGGAATGGTGTGTTTGCGAATGTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATCGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTa                                                                                     <  1:303679/143‑1 (MQ=255)
                                                        ttGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGa                                                                                   >  1:145143/1‑143 (MQ=255)
                                                           gCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAAtt                                                                                >  2:479526/1‑143 (MQ=255)
                                                            cAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGAGCTACAGCCATTGGATATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATGACGCAAAAGTGGAATtg                                                                               >  1:142090/1‑143 (MQ=255)
                                                              ggAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATtgtg                                                                             <  1:537297/143‑1 (MQ=255)
                                                                aaTGGTGGGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCa                                                                           <  1:524046/143‑1 (MQ=255)
                                                                  tGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCaaa                                                                         >  2:432257/1‑143 (MQ=255)
                                                                    gtgtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATa                                                                       >  2:191650/1‑143 (MQ=255)
                                                                    gtgtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTGAGTATTCAGGCCATAGATTACGCCAAACTAGACTTGTGCCAATa                                                                       >  2:100433/1‑143 (MQ=255)
                                                                     tgtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATaa                                                                      >  1:368170/1‑143 (MQ=255)
                                                                     tgtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATaa                                                                      >  1:263074/1‑143 (MQ=255)
                                                                      gttgttGTGATGTTGGCGCAGGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATaaa                                                                     <  2:211467/139‑1 (MQ=255)
                                                                      gtgtTTGTGATTTTGGTTGATGCGTTTGTTCGTCTTGTAGGATGTTGATTATGTGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCATGCAAAAGTAGAATTGTGCAAATaaa                                                                     <  2:41919/143‑1 (MQ=255)
                                                                        gtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATACACg                                                                   >  2:328668/1‑143 (MQ=255)
                                                                           tgtgAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAAGATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCa                                                                <  1:8537/143‑1 (MQ=255)
                                                                           tgtgAATTTCGGTCATGCTTTTTGTTGTCGTTTAGGTTGTTAATAATCTTCGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTTTTTAGTATTTGGGTGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCa                                                                <  2:49333/143‑1 (MQ=255)
                                                                            gtgAATTTGGCTTGTGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCATGAGTAGAATTGTGCAAATAAACGCCAg                                                               <  2:545452/143‑1 (MQ=255)
                                                                            gtgAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAg                                                               >  2:566182/1‑143 (MQ=255)
                                                                            gtgAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAg                                                               >  1:318375/1‑143 (MQ=255)
                                                                               aaTTTGGCTCATGCTTGTGTTGTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGt                                                            <  2:138834/143‑1 (MQ=255)
                                                                                aTTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCAGAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTa                                                           <  1:170383/143‑1 (MQ=255)
                                                                                 tttGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGAGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTaa                                                          >  2:338170/1‑143 (MQ=255)
                                                                                       tCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACTGCAGGGAAATTTTTg                                                    >  2:212529/1‑143 (MQ=255)
                                                                                       tCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGCGGCATAAGCGTTAAATGTTAGGGGGATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTg                                                    >  2:483482/1‑143 (MQ=255)
                                                                                         aTGCTTTTGTTCTCCTTTTAGGATGTTAGTAATATGGGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGaa                                                  <  1:280161/143‑1 (MQ=255)
                                                                                         aTGCTTTTGTTCTCCTCGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGaa                                                  >  2:46046/1‑143 (MQ=255)
                                                                                         aTGCTTTTGTTATCCGTGTAGGATGTTAATAATATGTGGCATAAGCGTTACATGATTTCGTGAGTTTCAGTGTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGaa                                                  <  1:619414/143‑1 (MQ=255)
                                                                                          gtggttttGTTGTCTTTGGAGGATGTTAATGATATGTGGCATAGGCGTTAAATGTTAGGGGTATGGGCAGTGTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGaa                                                  <  2:486377/139‑1 (MQ=255)
                                                                                            cTTTTGTTCTTCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGt                                               <  2:197116/143‑1 (MQ=255)
                                                                                               tttGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGGTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCa                                             <  2:12461/143‑1 (MQ=255)
                                                                                                ttGTGCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAg                                            <  2:600089/143‑1 (MQ=255)
                                                                                                   ctcttctTGTAGGATGTTAATAATCTGTGGCATAATCGTTAGATGTTAGGGGTATTGGCAGTTTTGTTTAGTAGTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaa                                         <  2:61905/142‑1 (MQ=255)
                                                                                                    tctacatgtgGGATGATAATAATATGTGGGATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGAAAAAGTAGAATTGTGCAAATAAAAGGCAGGGTAATTTTTGAAGGTCAGcaac                                        <  1:291347/137‑1 (MQ=255)
                                                                                                     ctcCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGTAAATGTAGAATTGCGCAAGTAAACGGCAGGGTAATTTTTGAAGGTCAgcagca                                       >  2:573444/1‑143 (MQ=255)
                                                                                                      tcCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaacaa                                      >  2:246196/1‑143 (MQ=255)
                                                                                                      tcCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaacaa                                      >  1:62541/1‑143 (MQ=255)
                                                                                                      tcCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTAAGcaacaa                                      >  2:210980/1‑143 (MQ=255)
                                                                                                            tAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTg                                >  2:418187/1‑143 (MQ=255)
                                                                                                              ggATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTCTGTGTAATAATGGTGCGACAGATCACGCAGAAGTAGAATTGTGCAAATAAACGGCAGGGAAATTTTTGAAGGTCAGCAACAAGAGTTGAtt                             >  1:260982/1‑143 (MQ=255)
                                                                                                                 tGTTAATGAGAGGGGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTaa                           <  2:448943/143‑1 (MQ=255)
                                                                                                                    taataaTATGCTGCATGAGCGTTAAATGTTAGGGGGATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTc                        <  2:366864/143‑1 (MQ=255)
                                                                                                                     aataatATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCt                       <  1:74290/143‑1 (MQ=255)
                                                                                                                     aataatATGTGGCATAAGCGTTAAATGTTAGGGGTATTGACAGTTTTGATTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTAAAGGTCAGCAACAAAAGTTGATTAATTCt                       >  2:189613/1‑143 (MQ=255)
                                                                                                                      ataataTGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGTGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCtt                      <  1:131226/143‑1 (MQ=255)
                                                                                                                       taataTGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCttt                     <  1:548772/143‑1 (MQ=255)
                                                                                                                       taataTGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCttt                     <  2:315017/143‑1 (MQ=255)
                                                                                                                        actatGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTg                    <  2:166298/141‑1 (MQ=255)
                                                                                                                         gtaggtgGCATAAGCGTTAACTGGTAGTGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGa                   <  1:148862/139‑1 (MQ=255)
                                                                                                                           atGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACTGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAgg                 <  2:255408/143‑1 (MQ=255)
                                                                                                                              tgGAATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAAc              <  2:328114/143‑1 (MQ=255)
                                                                                                                                ggaTAAGCGTTGAAGGTGAGGGGTATTGGCAGTTTTGGTTAGTATTTGGGGGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACAt            <  2:265112/141‑1 (MQ=255)
                                                                                                                                 cATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATg           <  1:516593/143‑1 (MQ=255)
                                                                                                                                        gTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGCACATGCAGTTat    >  1:75722/1‑143 (MQ=255)
                                                                                                                                        gTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGACCATGCCGTTat    >  2:530060/1‑143 (MQ=255)
                                                                                                                                         ttAAATGTTAGGGGGATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGAAAAATGCAGTTatg   >  2:523305/1‑143 (MQ=255)
                                                                                                                                          tAAATGTTAGGGGTGTTGGCAGTTTTGGTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTGTGAGGAACATGCAGTTatgc  >  1:304790/1‑143 (MQ=255)
                                                                                                                                          tAAATGTTAGGGGTATTGGGAGTTTTGTTTAGTATTTGGGCGACAGTTATCGCTGTAGTGGGGTTGTGAATGTAAACGGCAGGGTAATTTTTGAAGGTCCGAAATAAAAGTTGATTTATTCTTTGAGGAACATGCAGTTatgc  <  2:158464/143‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                          
ATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGC  >  NC_000913/4287281‑4287559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: