| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1712803 | 25 (0.780) | 3 (0.100) | 3/246 | NT | 10.9% | coding (35/1503 nt) | dtpA | dipeptide/tripeptide:H(+) symporter DtpA |
| ? | NC_000913 | = 1712811 | 26 (0.870) | coding (43/1503 nt) | dtpA | dipeptide/tripeptide:H(+) symporter DtpA | |||||
GCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTATGTCTGAAGCGGATTC > NC_000913/1712671‑1712944 | gCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATCCATAACGCGCGAAAGCACGCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTACACTGCAAACCCACAACCAACTGAAGACGTCAGtttagac > 2:255867/1‑139 (MQ=255)gCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACTAACTGAAAGCGTCAGTTTGAac < 2:624754‑M2/143‑3 (MQ=255) tttCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCGACTGCAAACCAAAAACAAAGTGAAGGCGTCAGTTGGAacgctt < 1:165651‑M2/143‑7 (MQ=255) acctcctACAATAACAATTGCGCGGATGTTTTTTATAGATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCaa < 2:51901/142‑1 (MQ=255) tCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAaaca > 1:623110/1‑143 (MQ=255) tataACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGaa > 1:42273/1‑143 (MQ=255) tccgttTGTTTCTTATACATAACGCAAGAAAGCACCCCCGTTAATATTAGATGTAAAAAAAGAGGTAAAAGTTTCCACTGCAAACCAAAAACCAACTGAAAGCGTtcaaactgacgctttcagttggtttttggtttgcagtg < 2:318077‑M1/141‑39 (MQ=255) tGTTTTTTATACATAACGCGAGAAAGCACCCCCGTAAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGCCCTTCTACCACAtcc > 1:255769/1‑142 (MQ=255) ttttttATACATAACGCGAGCAACCACCCCCGTAAATATGGGATGTAAACACCGACACTATTTGCTACACCGTAATCCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTCCCAACAACCGACGGCGTTCTATCTCAtcttc > 2:607827/1‑143 (MQ=255) ttttATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCAAAGGCGTTCTATCTCATCTtctc > 2:565877/1‑143 (MQ=255) ataCATAACGCGAGAAAGCACCCCCGTTAATCTGGGATGTAAAAAACGAGGTAAAAGTGTCCACTGCAAACCAACAACCAACTGAAAGCGTCAGTTTGAACGCTTTCCAACAACCGAAGGCGTTCTATCTCATCTTCTCGAtc > 2:248824/1‑142 (MQ=255) aCATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGa < 1:515370/143‑1 (MQ=255) agaAAGCACCCCCGTTAATATGGCATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGaa < 1:236366/143‑1 (MQ=255) gCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGCTTGAGTTATGGGAACGctt > 1:592440/1‑143 (MQ=255) cACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGGTATGGGAACGtttt > 1:187439/1‑143 (MQ=255) ccccacGTTAACATGGGATGTAAAAAAAGAGGTAGAAGTGTCCACTGCAAACCAAAAACCCACTGAAAGCGTCAGTGTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTg < 1:406253/142‑1 (MQ=255) cccGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGtt < 1:605146/143‑1 (MQ=255) atGGGATGTAAAAAAAGAGGTAAAAGTGTTCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGcc > 1:307153/1‑143 (MQ=255) tAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTCCACggc > 1:517068/1‑142 (MQ=255) aaaaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTCATTACCGCCTACAAGCAAtt > 2:425728/1‑143 (MQ=255) aaaaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTGCAAGGAATTa > 2:479250/1‑143 (MQ=255) aaGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATg < 2:17974/143‑1 (MQ=255) gTAAAAGGCTCCACCGCAAACCAAAAGCCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGt < 2:392997/143‑1 (MQ=255) gtgtCCACTGCAAACCAAAACCCAGCAGAAAGTTGCAGGTTGACCGCTTTCAAACAACCGAAGGCGTTCGATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCt < 2:573221/143‑1 (MQ=255) tCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGt > 1:507436/1‑143 (MQ=255) cACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAacgctttcagttggtttttggtttgcagtggaaacttttacctctttttttacatctaatattaacgggggtgctttcttgcgttatgtataagaaacaaacgga < 2:318077‑M2/143‑106 (MQ=255) aCTGCAAACCAAAAACCAACTGAAAGCGTCATTCTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGGTATGGGAACGTATTGGTTATTACGGCATACACGGAGGTATGGCTGTGTCCCTGGTTac > 1:342679/1‑142 (MQ=255) caaaaaccaaCTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTggg > 2:352471/1‑143 (MQ=255) aaaaaccaaCTGAAAGCGTtcaaactgacgctttcagttggttttt < 1:1396‑M1/46‑28 (MQ=255) aaaaaccaaCTGAAAGCGTtcaaactgacgctttcagttggttttt > 2:1396‑M1/1‑19 (MQ=255) aaaaaccaaCTGAAAGCGTCAGTTTGAacgctttcagttggttttt > 2:1396‑M2/1‑27 (MQ=255) aaaaaccaaCTGAAAGCGTCAGTTTGAacgctttcagttggttttt < 1:1396‑M2/46‑20 (MQ=255) aaCTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGCGTTATCGGCACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTTTGTCTg > 2:542471/1‑143 (MQ=255) aaGCGTtccaactgacgccttcactttgtttttggtttgcagtcgacacttttacctctttttttacatcccatattaacgggggtgctttctcgcgttatgtataaaaaacatacgcgcaattgttatagtgggaggggaaa < 1:165651‑M1/143‑138 (MQ=255) aGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTATGTCTGAAGCGGa < 2:516946/143‑1 (MQ=255) gTtcaaactgacgctttcagttagtttttggtttgcagtggacacttttacctctttttttacatcccatattaacgggggtgctttctcgcgttatgtataaaaaacatacgcgcaattgttatagtgggaggggaaacggc < 2:624754‑M1/143‑142 (MQ=255) | GCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTATGTCTGAAGCGGATTC > NC_000913/1712671‑1712944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |