Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,287,424 +T intergenic (‑53/‑340) acs ← / → nrfA acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,287,4231.T95.9% 288.5 / 4.9 98intergenic (‑52/‑341)acs/nrfAacetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase
Reads supporting (aligned to +/- strand):  ref base . (2/2);  new base T (49/44);  total (52/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 104 total aligned reads displayed.

ATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGC  >  NC_000913/4287281‑4287559
                                                                                                                                                 |                                                                                                                                         
aTTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGAATAAGCGTTAAATg                                                                                                                                            >  2:142432/1‑143 (MQ=255)
  tgttgAGACAGGGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGtt                                                                                                                                         <  2:126906/143‑2 (MQ=255)
   gttgATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGtta                                                                                                                                        <  1:44542/143‑3 (MQ=255)
   gttcttACGTCGCCTCGTGCTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGtta                                                                                                                                        <  2:824540/138‑3 (MQ=255)
     gggtACATCGCCTCGTACGGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGttagg                                                                                                                                      <  1:60505/140‑5 (MQ=255)
      gATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATGTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGttaggg                                                                                                                                     <  1:222704/143‑6 (MQ=255)
       aTACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTACATGTTAgggg                                                                                                                                    >  1:855542/1‑143 (MQ=255)
       aTACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAgggg                                                                                                                                    >  1:345451/1‑143 (MQ=255)
         aCATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTa                                                                                                                                  <  1:141681/143‑1 (MQ=255)
          cATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTAt                                                                                                                                 <  1:503175/143‑1 (MQ=255)
           aTCGCCTCGTACTGCTGAGGGTTTATCAGGCAACAGTCGGCGAGGGGGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTAtt                                                                                                                                >  1:635969/1‑143 (MQ=255)
                cTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAg                                                                                                                           >  1:326458/1‑143 (MQ=255)
                cTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTGGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGCTACTAATATGTGGCATAAGGGTTAAACGATAGGGGGATGGGCAg                                                                                                                           >  2:683680/1‑143 (MQ=255)
                  agTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGtt                                                                                                                         <  2:179642/142‑1 (MQ=255)
                       tgctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGtt                                                                                                                    >  2:918313/1‑143 (MQ=255)
                       tgctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGtt                                                                                                                    <  1:563423/143‑1 (MQ=255)
                        gctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAGTTTGGCTCATGCTTTTGTTCTCCTTGTCGGATGTTAATAATATGTGGCATAAGCGGTAAATGTCAGGGGTATTGGCCGTGTTGttt                                                                                                                   >  1:767790/1‑143 (MQ=255)
                          tgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCGCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGGTAGGGGTATTGGCAGTTCTGTGTAg                                                                                                                 >  2:573416/1‑143 (MQ=255)
                           gAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGt                                                                                                                >  1:535175/1‑143 (MQ=255)
                               gTTTAGCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGGGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTAttt                                                                                                            <  1:144772/143‑1 (MQ=255)
                                 ttATCAGGCAACTGTCTGCGATGTTGGCATGAATGGTTTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTgg                                                                                                          <  1:836516/143‑1 (MQ=255)
                                 ttATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTgg                                                                                                          <  2:864661/143‑1 (MQ=255)
                                   aTCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGc                                                                                                        <  1:500314/143‑1 (MQ=255)
                                   aTCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGc                                                                                                        <  2:384596/143‑1 (MQ=255)
                                   aTCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCGTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGc                                                                                                        >  2:218073/1‑143 (MQ=255)
                                    tCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCg                                                                                                       >  2:15970/1‑143 (MQ=255)
                                      aGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGAc                                                                                                     >  1:227602/1‑143 (MQ=255)
                                      aGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGAc                                                                                                     >  2:76073/1‑143 (MQ=255)
                                        ggaaCGGGCTGCGATGGTGGCAGGACTGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTACTTGCAGCATGTTAATATTATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAg                                                                                                   <  2:500701/141‑1 (MQ=255)
                                        gCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAACTGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAg                                                                                                   >  2:630789/1‑143 (MQ=255)
                                            cGGGCTGCGATGTTGGCATGTATGGTGTGTTTGTGAATTTTGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCa                                                                                               <  2:848508/143‑1 (MQ=255)
                                             tgtgtGCGATGTTGGTAGGTAGGGTGGGTTTGTGAATTTCGCTCATGCTTGTGTGCTCCTTGTATGATGTTAATAATACGTGGCATACGCGTTAAATGTTAGTGGTATTGGCAGTTTTGTTTAGTATTTGTGCGACAGATCAc                                                                                              <  2:605259/139‑1 (MQ=255)
                                             ggTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCAc                                                                                              <  1:804803/143‑1 (MQ=255)
                                              gTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACg                                                                                             >  1:904923/1‑143 (MQ=255)
                                               tCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGAGACAGATCACGc                                                                                            >  1:203900/1‑143 (MQ=255)
                                                 tGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCaa                                                                                          >  1:821022/1‑143 (MQ=255)
                                                  gCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCaaa                                                                                         >  1:894426/1‑143 (MQ=255)
                                                   ggATGTTGGCAGGAATGGTGTGTTTGTTAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCaaaa                                                                                        <  1:663122/142‑1 (MQ=255)
                                                   cGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCaaaa                                                                                        >  1:247322/1‑143 (MQ=255)
                                                     aTGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGATAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAACGt                                                                                      >  2:612301/1‑143 (MQ=255)
                                                      tGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTCAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCACAAGTa                                                                                     >  1:851926/1‑143 (MQ=255)
                                                        ttGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGa                                                                                   >  2:755117/1‑143 (MQ=255)
                                                         tGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTACTAATATGTGGCATAAGCGTTAAATGTTAGGGGGATTGGCAGTTTTGTGTAGTATTTGGGCGACAGATCACGAAAAAGTAGaa                                                                                  >  2:120550/1‑143 (MQ=255)
                                                         tGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGAGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGaa                                                                                  <  2:749984/143‑1 (MQ=255)
                                                           gCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAAtt                                                                                >  1:535277/1‑143 (MQ=255)
                                                           gCAGGAATGGTGTGTTTGTGAATTTGGCTAATGATTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCGTTAGCGTTAAATGTTAGGGGTATTGACAGTGTTGTAGAGTAGTTGAGCGACAGAACACGCAAAAGTAGCAtt                                                                                >  2:275493/1‑143 (MQ=255)
                                                            cAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTggg                                                                                                         >  1:596927/1‑117 (MQ=255)
                                                            cAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTggg                                                                                                         <  2:596927/117‑1 (MQ=255)
                                                             aGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATtgt                                                                              >  1:160570/1‑143 (MQ=255)
                                                              ggAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATtgtg                                                                             <  2:535277/143‑1 (MQ=255)
                                                              ggAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATtgtg                                                                             <  1:801770/143‑1 (MQ=255)
                                                              ggAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATtgtg                                                                             <  2:272444/143‑1 (MQ=255)
                                                                  tGGTGTGTTGGGGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCaaa                                                                         >  2:663235/1‑143 (MQ=255)
                                                                     tgtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCATTGTAGGATGTTAATAATATGTGGCATAAGCGATAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATaa                                                                      >  1:277748/1‑143 (MQ=255)
                                                                      gtgtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATaaa                                                                     >  1:751230/1‑143 (MQ=255)
                                                                      gtgtTGGTGAGTTTGGTTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATaaa                                                                     <  2:374842/143‑1 (MQ=255)
                                                                       tgtTTGTGAATTTGGCTCATGCTTTTGTTCGCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAAc                                                                    <  1:653284/143‑1 (MQ=255)
                                                                           tgtgAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAGACGGCa                                                                >  2:627891/1‑143 (MQ=255)
                                                                            gtgAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAg                                                               >  1:296681/1‑143 (MQ=255)
                                                                             tgAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAACTGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAACAGTAGCATTGTGCAAATAAACGGCAgg                                                              >  2:256043/1‑143 (MQ=255)
                                                                               aaTTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGt                                                            <  1:217292/143‑1 (MQ=255)
                                                                                       tCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAAttgttg                                                    >  1:642760/1‑143 (MQ=255)
                                                                                       tCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTg                                                    >  2:26525/1‑143 (MQ=255)
                                                                                          tGCTTTTGTTTTCCTTGAAAGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAg                                                 <  1:148179/143‑1 (MQ=255)
                                                                                          tGCTTTTGGTCTCTTTGTAGGATGTTAATTATATGTGGCATAAGCGTTTAATGTTAGGTGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCTGTTTAATTTTTGAAg                                                 <  2:812756/143‑1 (MQ=255)
                                                                                            cTTTTGTTCTCCTTGTAGGATGTTAATAAGATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTGTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGt                                               <  2:214241/143‑1 (MQ=255)
                                                                                             ttttGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTc                                              >  1:912407/1‑143 (MQ=255)
                                                                                              tttGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAGGGTCa                                             >  1:815/1‑143 (MQ=255)
                                                                                               ttGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTAGTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAg                                            <  1:281570/143‑1 (MQ=255)
                                                                                               ttGGTCTGCTGGTAGGAGGTTAATAATATGTGGCATAAGCGTTGAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAAGAAACGGCAGGGTAATTTTTGAAGGTCAg                                            <  2:547564/143‑1 (MQ=255)
                                                                                                 tttCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTATGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAACTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGca                                          <  1:683051/142‑1 (MQ=255)
                                                                                                  ttCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaa                                         <  1:284289/143‑1 (MQ=255)
                                                                                                  ttCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaa                                         <  1:280064/143‑1 (MQ=255)
                                                                                                  ttCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaa                                         >  1:497529/1‑143 (MQ=255)
                                                                                                  tggtcCTTGTGGGATGTTAATAAGATGTGGCAGATGGGTTAAATGTCAGGGGCATGGGCGGTTTTGTTTAGTATTTGGGCGACAGAGCACGCAAAAGTAGATTGGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaa                                         <  2:852507/140‑1 (MQ=255)
                                                                                                        ttGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGAAATTTTTGAAGGTCAGCAACAAAAg                                   >  2:360487/1‑143 (MQ=255)
                                                                                                          gTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGtt                                 <  1:433989/143‑1 (MQ=255)
                                                                                                           tAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAACAGTTg                                >  1:19953/1‑143 (MQ=255)
                                                                                                           tAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTg                                >  2:19667/1‑143 (MQ=255)
                                                                                                           tAGGATGTTAATAATATGTGGAATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTg                                <  1:229524/143‑1 (MQ=255)
                                                                                                            aGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGCATTTTCCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGa                               <  2:904923/143‑1 (MQ=255)
                                                                                                                 gTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAAt                          <  2:894426/143‑1 (MQ=255)
                                                                                                                  gtaagaaTATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGGAGAATTGGGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAAtt                         <  2:390936/142‑1 (MQ=255)
                                                                                                                   taataaTATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTc                        >  1:113204/1‑143 (MQ=255)
                                                                                                                     gtggtatGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCtt                      <  2:535175/139‑1 (MQ=255)
                                                                                                                      tagtctgtgGCATAGGCGTTATATGTTAGGTGTATTGGTAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTTTGCAAATAATCGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCttt                     <  2:894583/138‑1 (MQ=255)
                                                                                                                      aaataTGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCttt                     <  1:814665/142‑1 (MQ=255)
                                                                                                                        agagggggCATAAGCGTGAGAGGGGAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAAGAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGa                   <  1:102143/137‑1 (MQ=255)
                                                                                                                         tcgttgGCATATGCGTTAAGTGTTAGGGTCATTGGCAGTTTTGTTTAGTATGTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAATGTCAGCAACAAAAGTTGATTAATTCTTTGAg                  <  2:11084/139‑1 (MQ=255)
                                                                                                                          atGTGGGATAGGTTTTAAGTGTTAGGAGTATTTGCATTTTTGTTTAGTATTTGGGCGACAGATGACGCAATAGTAGAATTGTGCAAATATACGGCTGGGTTATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAgg                 <  2:755503/143‑1 (MQ=255)
                                                                                                                            gtgGCATTAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGaa               <  1:666899/143‑1 (MQ=255)
                                                                                                                               gCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACAt            >  2:842880/1‑143 (MQ=255)
                                                                                                                               gCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAACTCTTTGAGGAACAt            <  2:201056/143‑1 (MQ=255)
                                                                                                                                cATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCATGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATg           >  1:13113/1‑143 (MQ=255)
                                                                                                                                  tAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTGAGTATGTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCa         >  2:18078/1‑143 (MQ=255)
                                                                                                                                    aGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGCTGATTAATTCTTTGAGGAACACGCacg       >  2:645893/1‑141 (MQ=255)
                                                                                                                                     gCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGtt      >  1:133667/1‑143 (MQ=255)
                                                                                                                                        ttAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAGGTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCACCAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTatg   >  2:629773/1‑143 (MQ=255)
                                                                                                                                        ttAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGACCATGCCGTTatg   >  1:310588/1‑143 (MQ=255)
                                                                                                                                         tAAATGTTAGGTGTATTGGCAGGTTTGTTTTGTATGTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTGTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTatgc  <  2:242613/143‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                         
ATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGC  >  NC_000913/4287281‑4287559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: