New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	1 (0.020)	52 (1.050)	47/276	0.1	99.1%	intergenic (+253/‑33)	ychE/insH21	putative inner membrane protein/IS5 transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

CAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC  >  NC_000913/1299362‑1299638                                                                                                                                         |                                                                                                                                             cAGTTAGTTATAAGGATTTCCTTAACCGCTTCTCCTCACCATCATGTTATTCTCGCCACACCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGGAGAGGAAAGTGCTAAataata                                                                                                                                        <  1:394075‑M1/143‑7 (MQ=255)    ttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTTCTGAAGAATAATTGAAATGATATTATTAAGTCCACTGCAGTTGGTAGCAGAAAGTACTAAattataact                                                                                                                                     >  2:102998‑M1/1‑134 (MQ=255)      agttaTAAGGTTTTCATTAATTGCTTCTCCGCCCCATCATGTTATTTTCGCCAAATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                                                                                                                   <  2:512598‑M1/143‑12 (MQ=255)      agttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGATCATTCCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                                                                                                                   <  2:603818‑M1/143‑12 (MQ=255)        ttaTAAGGATTTCCTTAACTGCTTCTCCTCGCCTTCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                                                                                                                 <  2:334670‑M1/143‑14 (MQ=255)         tataAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattg                                                                                                                                <  2:202044‑M1/143‑15 (MQ=255)                   tCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattatt                                                                                                                      <  2:343930‑M1/143‑25 (MQ=255)                   tCCTTAACGGGTTCTCCTTACCATCATGTTATTTGCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGGTATTATTAATTCCACTGGCTTTGGTAGAGGAAAGGGCTAAataataatcaattgttaaattatt                                                                                                                      <  2:162278‑M1/143‑25 (MQ=255)                     cTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataatcatcaattattaaattattgt                                                                                                                    >  2:505853‑M1/1‑117 (MQ=255)                          cTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATATTTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatt                                                                                                               >  2:418434‑M1/1‑112 (MQ=255)                            gCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGGAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttc                                                                                                             <  1:302224‑M1/143‑34 (MQ=255)                              ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcac                                                                                                           >  1:784784‑M1/1‑108 (MQ=255)                              ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcac                                                                                                           <  1:695200‑M1/143‑36 (MQ=255)                                  cctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactact                                                                                                       <  2:759584‑M1/143‑40 (MQ=255)                                      aCCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGACGAATAATTGAAATGATCTTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatcattgcacatttcactactggac                                                                                                   >  2:505945‑M1/1‑100 (MQ=255)                                             tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                            <  1:385113‑M1/143‑51 (MQ=255)                                              gTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc                                                                                           <  1:354219‑M1/143‑52 (MQ=255)                                               ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatca                                                                                          >  1:853637‑M1/1‑91 (MQ=255)                                                  ttttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGGGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa                                                                                       >  2:366675‑M1/1‑88 (MQ=255)                                                    ttggccaCATCATAATCCTTCGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa                                                                                     <  2:408296‑M1/140‑58 (MQ=255)                                                    ttCGCCAAATCATAATGTTGGGCTTGTTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa                                                                                     <  2:338230‑M1/143‑58 (MQ=255)                                                        ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata                                                                                 <  2:357978‑M1/143‑62 (MQ=255)                                                         cacaTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataatactcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatag                                                                                >  1:779039‑M1/1‑81 (MQ=255)                                                          acaTCATAATCCGGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagataga                                                                               <  1:345279‑M1/143‑64 (MQ=255)                                                                  aTCCGGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctta                                                                       <  1:335778‑M1/143‑72 (MQ=255)                                                                           ttGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctc                                                              >  2:504719‑M1/1‑63 (MQ=255)                                                                              cTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctat                                                           >  1:448477‑M1/1‑60 (MQ=255)                                                                                 aagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttgaattattgtgcatttcactactggaactgtaatcagaaaagatacacatgcttagccaatctctatttg                                                        >  2:182679‑M1/1‑57 (MQ=255)                                                                                      taatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattga                                                   >  1:398728‑M1/1‑52 (MQ=255)                                                                                      taatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattga                                                   <  1:307663‑M1/143‑92 (MQ=255)                                                                                       aatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaa                                                  <  2:914408‑M1/143‑93 (MQ=255)                                                                                        atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                 <  1:884725‑M1/143‑94 (MQ=255)                                                                                        atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                 <  1:667782‑M1/143‑94 (MQ=255)                                                                                         ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgaaagcaca                                                >  2:793139‑M1/1‑49 (MQ=255)                                                                                           gAAATGGTATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattga                                              <  2:177057‑M1/143‑97 (MQ=255)                                                                                           gAAATGATATTATTAATTCCACTGCCTTTGGTAAGGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttaactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattcaattgc                                              >  2:83989‑M1/1‑47 (MQ=255)                                                                                            aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaa                                             <  1:102998‑M1/143‑98 (MQ=255)                                                                                             aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctattgggttgaggggaaa                                            >  1:316788‑M1/1‑45 (MQ=255)                                                                                               tGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaaga                                          <  2:687124‑M1/143‑101 (MQ=255)                                                                                                    ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttt                                     <  2:284330‑M1/143‑106 (MQ=255)                                                                                                    ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttt                                     >  2:805714‑M1/1‑38 (MQ=255)                                                                                                    ttattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttt                                     >  1:330584‑M1/1‑38 (MQ=255)                                                                                                      attaATTCCGCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgt                                   <  2:337428‑M1/143‑108 (MQ=255)                                                                                                         aaTTCCACTGCCTTTGTTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaa                                <  2:296621‑M1/143‑111 (MQ=255)                                                                                                                   ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatg                      >  1:523480‑M1/1‑23 (MQ=255)                                                                                                                     tttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaacgatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcc                    >  1:289631‑M1/1‑21 (MQ=255)                                                                                                                     tttGGAAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgca                    <  2:313570‑M1/143‑123 (MQ=255)                                                                                                                      ttGGTAGAGGAAAGTGGTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaa                   <  2:167695‑M1/143‑124 (MQ=255)                                                                                                                       tGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaag                  <  1:490384‑M1/143‑125 (MQ=255)                                                                                                                        gggagaggaaAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagc                 <  2:332409‑M1/140‑126 (MQ=255)                                                                                                                              gggaaGTGCTAAGGAGGGTGCGAACAAGTCGCTGATATGAGATCATGTTTGTGATCTGGAGCCATAGAACAGGGTGCATCATGAGTCATCAACTTACGTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGaaaa           <  1:203944/140‑1 (MQ=1)                                                                                                                              ggAAAGTTCTAAacgataataaattgttaaattatggtgcagttcactgctggaactgtaatcagaaaagctagaaatgcttagccaggctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctataga           <  2:426320‑M1/143‑132 (MQ=255)                                                                                                                                 aaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattc        <  2:26600‑M1/143‑135 (MQ=255)                                                                                                                                       tAAataataatcaattgttaaattattgtgcatttcactactggcactgtaatcagaaaagatcgacatgcttagccaatctctatatgattgaatagaaagatgtttgttaatgcatggatgcaagctatagaatctgatat  >  2:77787‑M1/1‑3 (MQ=255)                                                                                                                                       tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatac  >  1:885106‑M1/1‑3 (MQ=255)                                                                                                                                         |                                                                                                                                             CAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC  >  NC_000913/1299362‑1299638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.