mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,797,034 | 0 | T | . | 46.1% | 152.2 / 155.8 | 90 | coding (87/1260 nt) | waaL | O‑antigen ligase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.9% | 153.9 / 91.3 | 149 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 62 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3946053 | 2 (0.040) | 10 (0.200) | 8/276 | 4.8 | 83.7% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 10 (0.200) | 8/276 | 4.8 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 3423318 = | 59 (1.150) | 6 (0.130) | 6/266 | 5.5 | 9.7% | intergenic (+124/+105) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA |
| ? | NC_000913 | 3423341 = | 56 (1.170) | intergenic (+147/+82) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 10 (0.200) | 6/272 | 5.6 | 38.1% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 4038811 | 17 (0.330) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 951207 = | 51 (1.000) | 6 (0.120) | 6/272 | 5.6 | 10.8% | intergenic (‑127/+65) | pflA/pflB | pyruvate formate‑lyase activating enzyme/pyruvate formate‑lyase |
| ? | NC_000913 | 951233 = | 50 (1.020) | intergenic (‑153/+39) | pflA/pflB | pyruvate formate‑lyase activating enzyme/pyruvate formate‑lyase | |||||
| * | ? | NC_000913 | = 1096933 | 57 (1.110) | 6 (0.120) | 6/278 | 5.7 | 9.5% | intergenic (+104/+632) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| ? | NC_000913 | = 1096955 | 59 (1.180) | intergenic (+126/+610) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4431289 = | NA (NA) | 5 (0.110) | 5/264 | 5.9 | NA | intergenic (+13/+32) | cycA/ytfE | serine/alanine/glycine/cycloserine:H(+)symporter /iron‑sulfur cluster repair protein YtfE |
| ? | NC_000913 | 4431314 = | NA (NA) | noncoding (25/25 nt) | other | REPt333 | |||||
| * | ? | NC_000913 | 4257736 = | 100 (1.960) | 6 (0.120) | 5/270 | 6.0 | 5.9% | intergenic (+13/‑6) | lexA/dinF | DNA‑binding transcriptional repressor LexA/DNA damage‑inducible protein F |
| ? | NC_000913 | 4257762 = | 98 (2.020) | coding (21/1380 nt) | dinF | DNA damage‑inducible protein F | |||||
| * | ? | NC_000913 | 2236651 = | NA (NA) | 5 (0.100) | 5/270 | 6.0 | NA | noncoding (1/34 nt) | other | REP156c |
| ? | NC_000913 | 3877615 = | NA (NA) | noncoding (29/34 nt) | other | REP280a | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 8 (0.160) | 5/272 | 6.1 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA | |||||