New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4295835 =	NA (NA)	5 (0.100) +GTTGAT	4/252	NT	NA	intergenic (+41/+601)	gltP/yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
	?	NC_000913	4296251 =	NA (NA)					noncoding (31/34 nt)	other	REP321h

CAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAA  >  NC_000913/4296109‑4296285                                                                                                                                               |                                   acgcgttaagcgtcgcatcaggcgttgatgtcggatgcggcataaacgccttatccgacctacaaaatcacgctaaagcaggctattgcgctgtctggcgtaggactggtaagacgcgggaagcgtcgcatccggcgttgatg                                    >  1:848814‑M2/143‑143 (MQ=255)   gcgttaagcgtcgcatcaggcgttgatgtcggatgcggcataaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcggcaagcgtcgcatcaggcgttgatGTc                                  >  1:336791‑M2/141‑143 (MQ=255)    cggtaagcgtcgcagcaggcgtggatgttggctgcggcataaacgccttatccgacctagaaagtcacgctaattcaggcttttgcgctgtctggcgtaggcctgataagacgcggcaagcgtcgcatcaggcgttgatGTCg                                 <  1:95282‑M2/4‑1 (MQ=255)       tgagcggcgcgtgaggcgttgaggtcggatgcggcatagccgcgtgctccgacctacaaaaacaggttaaatcgggctattgcgctgtctggcgtaggcctgataagacgcggcaagcgtcgcatcaggcgttgatGTCGGAt                              <  1:673185‑M2/7‑1 (MQ=255)                         ttgatggcggatgcggcgtaaacgccttatccgacctacaaaatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcgttaagcgtcgcatcaggcgttgatGTCGGATAAGGCGTTTATGCCGCAt            <  1:687329‑M2/25‑1 (MQ=255)                              gtcggctgcggccgactcgcctgatccggcctacatattcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcgttaagcgtcgcatcaggcgttgatGTCGGATAAGGCGTTTATGCCGCATCCGAc       <  2:78468‑M2/30‑1 (MQ=255)                                  gatgcggcgtaaacgccttatccgacctagaagatcacgctaaatcaggctattgcgctgtctggcgtaggcctgataagacgcgttaagcgtcgcatcaggcgttgatGTCGGATAAGGCGTTTATGCCGCATCCGACATCa   <  1:410024‑M2/34‑1 (MQ=255)                                   gtgcggcgtaagcgtcttatccgacctacaaaatcacgctgaatcaggctggtgcgctgtctggcgtaggcctgataagacgcgttaagcggcgcatcaggcgttgatGTCGGATAAGGCGTTTATGCCGCATCCGACATCaa  <  2:32474‑M2/35‑1 (MQ=255)                                                    cATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATg                  >  2:329160/1‑110 (MQ=31)                                                                            aCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATc           >  2:157724/1‑93 (MQ=34)                                                                                                                                               |                                   CAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAA  >  NC_000913/4296109‑4296285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.