Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,287,424 +T intergenic (‑53/‑340) acs ← / → nrfA acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,287,4231.T98.8% 231.4 / ‑6.0 81intergenic (‑52/‑341)acs/nrfAacetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase
Reads supporting (aligned to +/- strand):  ref base . (0/0);  major base T (51/29);  minor base A (1/0);  total (52/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.84e-01

ATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGC  >  NC_000913/4287281‑4287559
                                                                                                                                               |                                                                                                                                         
aTTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATg                                                                                                                                            >  1:436783/1‑143 (MQ=255)
     tgATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGttagg                                                                                                                                      >  1:323254/1‑139 (MQ=255)
           aTCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGCTGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCGTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAACGTTAGGGGTAtt                                                                                                                                 >  2:578098/1‑143 (MQ=255)
            tCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGCTGTTGGCAGGAATGGTGTGGTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAAGAATATGTGGTTTATGTGTGAATTGTTGGGGGTATTg                                                                                                                                >  2:602045/1‑143 (MQ=255)
            tCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGACTTTGGCTCATGCTTTTGTTCTCCGTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGGAtgg                                                                                                                                >  2:138191/1‑141 (MQ=255)
            tCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTCGGCAGGAATGGTGTGTTTGTGGATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATGAGCGTTAAATGTTAGGGGTATTg                                                                                                                                >  2:669182/1‑143 (MQ=255)
             cGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTgg                                                                                                                               >  1:721296/1‑143 (MQ=255)
                 cggTAGTGCTGAGGGTGTTTCGGGCATCGGTCTGGCTTGTGGGGAGGTATGGTGTGTTTGTGAATCTGGCTCATGCTTTGGTTCTCCTTGTAGGATGTTAATAATATGAGGCATATGCGTTAAATGTTAGGGGTATTGGCAGt                                                                                                                           <  2:290869/141‑1 (MQ=255)
                   gtgctgctgAGGGTTTATCAGGCGACGGTCTGCGATGGTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGttt                                                                                                                         <  1:462480/140‑1 (MQ=255)
                    tatgcgtgAGGGTTCATCAGGCATCGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGtttt                                                                                                                        <  1:230810/137‑1 (MQ=255)
                    tACTGCTGGGGGTTTTTCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGtttt                                                                                                                        <  2:569374/143‑1 (MQ=255)
                    tACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGtttt                                                                                                                        >  2:106682/1‑143 (MQ=255)
                      ctgctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGt                                                                                                                      <  1:653402/143‑1 (MQ=255)
                       tgctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGtt                                                                                                                     <  1:74996/143‑1 (MQ=255)
                         ctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCATGAATTGTGTGTTTTTTTATTTGTCTCATGCTTTTGGTCGCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTa                                                                                                                   <  1:238119/143‑1 (MQ=255)
                         ctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTa                                                                                                                   <  1:576838/143‑1 (MQ=255)
                          tgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCAGAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAg                                                                                                                  >  2:427967/1‑143 (MQ=255)
                            aGGGTTTATCAGGCAACGGTCTGCGATGTTGGAAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTa                                                                                                                <  1:501593/143‑1 (MQ=255)
                              gggttATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTACATGTTAGGGGTATTGGCAGCTTTGTTTAGTGtt                                                                                                              >  2:239181/4‑143 (MQ=255)
                               gTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTAttt                                                                                                             <  1:607041/143‑1 (MQ=255)
                               gTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGGATTGGCAGTTTTGTTTAGTaaat                                                                                                             >  1:20447/1‑140 (MQ=255)
                                      aGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGATTAGTATTAgggtaaa                                                                                                      >  2:50399/1‑139 (MQ=255)
                                      aGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGATAGGGGTATTGGCAGTTTTGTTGAGGATTTGTGCGAc                                                                                                      >  2:572796/1‑143 (MQ=255)
                                      aGGCAACGGTCTGCGATGTTGGCAGGAATGGCGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGATATTGGCAGTTTTGTATACCATTTggagaac                                                                                                      >  2:191002/1‑138 (MQ=255)
                                       ggCACCGGTCTGCAATGACAGCTGGAATGGGGTGTTTGTGAATGTGGCTCATGCTTTTGTTCTCCTTGGAGGATGTTAATAATATGTGTCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACa                                                                                                     <  1:20557/143‑1 (MQ=255)
                                       ggCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACa                                                                                                     >  2:164464/1‑143 (MQ=255)
                                       ggCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACa                                                                                                     >  1:109482/1‑143 (MQ=255)
                                       ggCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCATGTATGAGGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTCTGTTTAGTATTTGGGCGACa                                                                                                     >  2:473541/1‑143 (MQ=255)
                                        gCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGCATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAACTGTTAGGGGTCTTGGCAGTTTTGTTTAGTATTGGGGCGACAg                                                                                                    >  2:192402/1‑143 (MQ=255)
                                        gCAACGGTCTGCGATGTTGGCAGGAATGGTGTGGTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTGTAGTATTTGGGCGACAg                                                                                                    >  2:419164/1‑143 (MQ=255)
                                             ggTCTGCGATGTTGACAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCAc                                                                                               <  2:363908/143‑1 (MQ=255)
                                              gTCTGCGAGGTGGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAGTGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACg                                                                                              <  2:368706/143‑1 (MQ=255)
                                                  gCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTATCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGAAGATTTGATGAGGATTTGGGCGACAGATCACGCaac                                                                                          >  2:314134/1‑142 (MQ=255)
                                                    gATGTTGGCAGGAATGGTGTGTTTGAGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATAGGCAGTTTTGTGTAGTATTTGGGCGAGAGATCACGCAagag                                                                                        >  2:49914/1‑143 (MQ=255)
                                                     aTGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGt                                                                                       >  1:468324/1‑143 (MQ=255)
                                                        ttGGCAGGAGTGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTGAATAGTATGTGTCATAAGCGCTAAATGTTGGGGGTNTGGGCAGTTTTGTTTAGTAGTTGGGCGACAGAGCACGGAAAGGTAGa                                                                                    >  2:109387/1‑143 (MQ=255)
                                                          ggCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCCTAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAAt                                                                                  >  2:482847/1‑143 (MQ=255)
                                                              gtaaTGCTGTTTTTTTGATTTTGGCTCTTGCTTTTGTTCTCCTTGTATGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATtgtg                                                                              <  2:509900/141‑1 (MQ=255)
                                                              ggAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATtgtg                                                                              <  1:427967/143‑1 (MQ=255)
                                                                aaTGGTGTGTTTGTAGATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATGATATGTGGTGTAATCGTTATTTGTTTGGCGCAGGATCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCa                                                                            <  2:511980/143‑1 (MQ=255)
                                                                aaTGGTGTGTTTGTAATGTTGGCTCATGCTTTTGTTTGCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCa                                                                            <  2:154087/143‑1 (MQ=255)
                                                                    gtgtgtTTGTGAATTTGGCGCATGCTGTTGTTCTCCCTGGAGGATGTTAATAATATGTGGCATAAGCGTTAAAGGTTAGGGGTATTGGCAGCTTTGTTCAGTATTTAGGCGACAGATCACGCAGAAGTAGAATTGTGcgactc                                                                        >  2:155938/1‑138 (MQ=255)
                                                                        gtTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGATAATAAACTGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTAGGCGACAGATCACGCAAAAGGAGAATTGTGCaaaatctcg                                                                    >  2:379437/1‑137 (MQ=255)
                                                                         tttGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTATATGTTAGGGGTATTGGCAGTTTTGTTTACTATTTGTGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACgg                                                                   >  2:63369/1‑143 (MQ=255)
                                                                            gtgAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAg                                                                >  1:120634/1‑143 (MQ=255)
                                                                              gAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAggg                                                              >  1:375829/1‑143 (MQ=255)
                                                                               aaTTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATACACGGCAGGGt                                                             >  2:393203/1‑143 (MQ=255)
                                                                                 tttGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTaa                                                           >  1:406468/1‑143 (MQ=255)
                                                                                  ttGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATCAGCGTTAAATGTTAGGGGTATTGGCAGTGTTGTTTAGTATTTGGGCGACAGATCACGCAAGCGTAGAATTGTGCAAAGAAGCGGAAGGGTAAt                                                          >  2:666936/1‑143 (MQ=255)
                                                                                  ttGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTGTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAAt                                                          <  1:614897/143‑1 (MQ=255)
                                                                                   tGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAAtt                                                         >  1:434909/1‑143 (MQ=255)
                                                                                    ggCTCATGCTTTTGTTCTCCTTTTAGGATGTTAATATTATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAAttt                                                        <  1:553944/143‑1 (MQ=255)
                                                                                      cTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTGTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCCGGGTAAtttgt                                                      >  2:30992/1‑141 (MQ=255)
                                                                                       tCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTCGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTg                                                     >  2:25075/1‑143 (MQ=255)
                                                                                       tCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTg                                                     >  1:708224/1‑143 (MQ=255)
                                                                                       tCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTg                                                     >  1:198576/1‑143 (MQ=255)
                                                                                       tCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAAATTTTg                                                     >  2:136686/1‑143 (MQ=255)
                                                                                         aTGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGaa                                                   >  1:280893/1‑143 (MQ=255)
                                                                                         aTGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGaa                                                   <  1:106682/143‑1 (MQ=255)
                                                                                         aTGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGaa                                                   >  1:708613/1‑143 (MQ=255)
                                                                                           gCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAgg                                                 >  1:406112/1‑143 (MQ=255)
                                                                                            cTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGt                                                >  1:55106/1‑143 (MQ=255)
                                                                                            cTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGt                                                <  2:138602/143‑1 (MQ=255)
                                                                                              tttGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAGTTTTTGAAGGTCa                                             >  2:459536/1‑143 (MQ=255)
                                                                                              tttGTGCTCCTTGTATGATGTTTATGATCTGTTGTATTGGCGTTAGGTGTTAGGCGTACTGGCAGTTTTGTTTGGTATTTGGTCGACAGATTACGTTAGAGTAGGGTTGTTCTAGTAAACGGCAGGGTAATTTTTGAAGGTCa                                             <  2:670546/143‑1 (MQ=255)
                                                                                               ttGTGCGCCTTGTTGGATGTTACTAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTGTTGTTTAGTATTTGGGCGACAGATCACGCTGAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAg                                            <  2:219119/143‑1 (MQ=255)
                                                                                                    ctcCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGcaaca                                       >  1:442556/1‑143 (MQ=255)
                                                                                                       cTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAGTTTTTGAAGGTCAGCAACaaaa                                    >  1:10112/1‑143 (MQ=255)
                                                                                                       cTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACaaaa                                    <  2:137251/143‑1 (MQ=255)
                                                                                                        ttGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAg                                   >  1:640498/1‑143 (MQ=255)
                                                                                                                tGTTAATAATATGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATGTTTGAAGGTCAGCAACACAAGTTGATTaa                           >  2:185675/1‑143 (MQ=255)
                                                                                                                      taataTGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCttt                     >  1:628183/1‑143 (MQ=255)
                                                                                                                       aataTGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTg                    <  1:431578/143‑1 (MQ=255)
                                                                                                                        atatGTGGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGa                   >  1:422114/1‑143 (MQ=255)
                                                                                                                           tgtgGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGa                <  1:273044/143‑1 (MQ=255)
                                                                                                                             tgGTATAAGCGGTAAGTGTTAGGGGGATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAAc              <  2:165856/143‑1 (MQ=255)
                                                                                                                             tgGCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAAc              >  1:10157/1‑143 (MQ=255)
                                                                                                                               gCATAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTCTTTGGGCGAGAGATCAAGCACGAGTAGAATTGTGCAAAGAACCGGCAGGGCAATTGTTCAAGGTCAGCAACAAAAGTGGATTAATGCTTTGAGGagcct            >  2:273822/1‑139 (MQ=255)
                                                                                                                                  tAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGCATTGTGCAAATAAACGGCAGGGTCATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAAGATGcg         >  1:295365/1‑142 (MQ=255)
                                                                                                                                  tAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAGGGTAGAGCGGGAAAAATGATTAATTTTTTGAGGAACATGCa         <  2:323254/143‑1 (MQ=255)
                                                                                                                                  tAAGCGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCa         <  2:134624/143‑1 (MQ=255)
                                                                                                                                      cGTTAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTAGAGGAACATGCAGTTa     >  2:381975/1‑143 (MQ=255)
                                                                                                                                        ttaatggTAGGGGTATTGGCAGTTTTGTTTATTATTTGGGCGACAGATCACGCAATAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAGTTCTTTTAGGAACATGCAGTTatgc  <  2:632133/137‑1 (MQ=255)
                                                                                                                                        ttAAATGTTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTAGATTAATTCTTTGAGGAACATGCAGTTatg   >  1:228555/1‑143 (MQ=255)
                                                                                                                                               |                                                                                                                                         
ATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGC  >  NC_000913/4287281‑4287559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: