Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 568,268 IS1 (–) +9 bp intergenic (+21/‑39) renD → / → emrE DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 19796 =NA (NA)37 (0.940) 32/282 0.2 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 568276 0 (0.000)intergenic (+29/‑39) renD/emrE DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE
* ? NC_000913 = 258675NA (NA)35 (0.880) 28/284 0.4 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 568268 = 0 (0.000)intergenic (+21/‑47) renD/emrE DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE

AGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/19938‑19796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTC  <  NC_000913/568276‑568143
                                                                                                                                                                                                                                                                                      
AGCGGCATAACCTGAAACTGAGGCAGCACCGGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC                                                                                                                                         <  1:495234/143‑1
   GGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTAC                                                                                                                                      <  2:260293/143‑1
          CCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGA                                                                                                                               >  2:453701/1‑143
           CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAA                                                                                                                              >  1:260627/1‑143
              AATCTGAGGCATTGCCTGGCACGGTTGTGATGGAAGTCGCTGTCTTTCTCAAAATCTGTTGAGCTGCATGACAAAGTCATAGGGCATTATTTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTC                                                                                                                           <  2:434567/143‑1
                    agcCAGTACCTGCCCCGGCCGGGACGGTAGTCTCTCTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCTGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCA                                                                                                                     <  1:191152/140‑1
                     GGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTCTGAACTCAACTCAC                                                                                                                    <  2:441765/143‑1
                                GCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACCCAACTCACCTGTTTCATCA                                                                                                         >  1:413257/1‑143
                                           ACGGAAGTCGCTGGCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCA                                                                                             <  2:387880/143‑1
                                            CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGCGCTGCATGACAAAGTCCTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATTAT‑TGTGTTCCCAT                                                                                            >  1:422612/1‑143
                                             GGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATT                                                                                           >  1:571869/1‑143
                                                agcCGCTGTCGTTCTCAAAAGCGGGGGAGCTGCATGCCAAAGTAATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGAT                                                                                        <  1:405030/140‑1
                                                        TCGTTCTCAAAATCGGTGGTGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTAGCAAGAAGGGGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTT                                                                                <  1:582171/143‑1
                                                        TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTT                                                                                <  2:519641/143‑1
                                                        TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑GGTGTTCCCATTGATGTTCTTTT                                                                                >  1:178194/1‑143
                                                           TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATA                                                                             <  1:676997/143‑1
                                                           TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCAGCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATA                                                                             <  1:357665/143‑1
                                                                    TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTAACA‑CATCTGGCTTCCGATTGATGTTCTTTTATATACCCTCAA                                                                    <  1:138240/143‑1
                                                                           AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGT                                                             <  1:287213/143‑1
                                                                                 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATC                                                       <  1:387415/143‑1
                                                                                  TGACAGAGTCATCGGGCACTGTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCG                                                      <  2:174034/143‑1
                                                                                   GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCACTAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCCT‑TGTGTTCCCATTGATGTTCTCTCATATACCCTCAATACCCGTTCCACCGC                                                     >  2:27399/1‑143
                                                                                    ACAAAGTCCTCGGGCATTATCTGAACATAAAACACTATCAATAAGGTGGGGTCAGTAACTACAGTTTGCACTCAACTCACCTGTTTACTCAT‑TGTGTTCCCATCGATGTTCTTTTCTCTACCCTCAAGACCCGTGTCGTCGCG                                                    >  2:715644/1‑143
                                                                                     CAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGG                                                   <  2:304448/143‑1
                                                                                             TCGGGCAATATCCGAACACAAAACACTATCAATAAGTTCGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGG                                           <  2:234856/143‑1
                                                                                                GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGA                                        <  2:370464/143‑1
                                                                                                  CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACACTCAATACCCGTTTCATCGCGGCCCTCTAGCGACA                                      >  2:398347/1‑143
                                                                                                   ATTATCTGCACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACAC                                     <  2:253733/143‑1
                                                                                                         TGAACATAAAACACTATCAATATGTTGGAGTCAGTACCGACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTA                               <  1:131104/143‑1
                                                                                                         TGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTA                               <  1:632185/143‑1
                                                                                                           AACATAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTAATCGCGGCATTCTTGCGACACTCCTTAAA                             >  2:207448/1‑143
                                                                                                             CATAAAACACTATCAATAAGTTGGAGTCATAACCTACAATTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTCCTATATACCCTCAATACCCGCTTCATCGCGGCACTATGGCGACCCTCCTTACAAA                           >  2:404833/1‑143
                                                                                                               TAAAACACTATCAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATC                         <  1:83051/143‑1
                                                                                                                          CAATCAGTTCGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATCCCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCT              <  2:272560/143‑1
                                                                                                                          CAATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTGCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCT              <  2:359625/143‑1
                                                                                                                           AATAAGTTGGAGTCATTACCTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGATTCCTCGGCGTATTCTTTCGTCTGTCCTTAAGAATCAGATTCGTGCTC             >  1:488197/1‑143
                                                                                                                                  TGGAGTTATTACCTACAGTTTGGACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTC      <  2:78550/143‑1
                                                                                                                                      GTCATTACGTATAGTTTGAACTCATCTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTC  <  2:438490/143‑1
                                                                                                                                                                                                                                                                                      
AGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/19938‑19796
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACAGTTTGAACTCAACTCACCTGTTTCATCAT‑TGTGTTCCCATTGATGTTCTTTTATATACCCTCAATACCCGTTTCATCGCGGCACTCTGGCGACACTCCTTAAAAATCAGATTCGTGCTCACCTTTCCTTC  <  NC_000913/568276‑568143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.