| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,158,922 | Δ6 bp | coding (433‑438/918 nt) | oxyR → | DNA‑binding transcriptional dual regulator OxyR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4158922 | 4158927 | 6 | 36 [0] | [0] 36 | oxyR | DNA‑binding transcriptional dual regulator OxyR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4158921 | 0 (0.000) | 36 (0.910) | 32/284 | 0.2 | 100% | coding (432/918 nt) | oxyR | DNA‑binding transcriptional dual regulator OxyR |
| ? | NC_000913 | 4158928 = | 0 (0.000) | coding (439/918 nt) | oxyR | DNA‑binding transcriptional dual regulator OxyR | |||||
TCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4158783‑4158921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGC > NC_000913/4158928‑4159069 TCCAACAGTGGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAACGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCCGCAAACTCGAAGGCGTGGCGC > 2:16870/1‑143 GGACCGTACCTGCTACCGCATATTACCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAAGGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGA < 1:115581/143‑1 GACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGgg > 1:490122/1‑141 ACCGTACATGCTACCGCATATTATCACTATGCGGCACAAGACCTTTCCAAAGCGGGAGATGTATCTGCATGAAGCAGGGCCCGACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGGGCAAGAGA > 1:588136/1‑143 cgcgACCCGCTACCGCATATTATCCCTATGCTGCACCAGACCTTGCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGCAGCCACTGGACTGCGTCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAG < 1:565936/139‑1 CCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAG > 1:3132/1‑143 tcaCTATGCTACGCCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCCCCAGTTACTGGCGCAACTGGCCAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCG > 2:157075/4‑143 CTGCACCCAGCCTCTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAACTGCCGTTGTTTGA < 2:185268/143‑1 CACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTGACTGGCGCAACGGGACGGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATGCAGTGAAGTGCCGTGGTTTGATGA > 2:71012/1‑143 CCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCT < 1:564729/143‑1 AGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCT < 2:542918/143‑1 TGCAGGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCAC < 1:391398/143‑1 GCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCAGCCGTGGGC > 1:349609/1‑143 AGACCCTCCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAAC < 1:706529/143‑1 ACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATGCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCCAGCTATGCAGCTCAGCCGTGGGCGCACCG > 2:546346/1‑143 CCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGCGCCAATGTTGCTGGCTATCTATGCAAATCACTAGTGGACGAACCGCG > 1:44977/1‑143 CACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGA > 1:324034/1‑143 gctataTACTGGCGGAACGTGACAGCGGGATACGCGGTTGCGTGGCGCTGGTAAAAGGGAGCGAAGCATTCATTGAAGTGCCGGTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAA < 2:600651/137‑1 AGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGACTGC > 1:122878/1‑143 AGTTACTAGCGCAACTGGACAGCGGCAGACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGC < 2:62453/143‑1 ACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTAC > 1:507339/1‑143 ACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTAC < 1:194652/143‑1 ACTGGCGCAACCGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTAC < 1:635786/143‑1 CTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACC > 1:4261/1‑143 GCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGG > 2:542419/1‑143 GCAACTGGACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGG > 1:634006/1‑143 GACAGCGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCATCCGTGAGCGAACCGCGAATGATTACTGATGGCCGCTCT > 2:280878/1‑143 ctGCGGCAAACGCGATTGCGCGGCGCTGGTGAAAGAGAGCGAAGCATTCGTTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGG < 1:201714/141‑1 CGGCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATGCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGCTGGCCGACCTGGCAG > 2:94679/1‑143 GCAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGAGAATGCGTACCGATGGCCGATCGGGCAGGG > 2:696949/1‑143 CAAACTCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG < 1:567235/143‑1 TCGATTGCGTGGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAA > 1:609287/1‑143 gttggtGTGGGGCTGGGGAAGGAGAGCGGAGTATTCATTGTATTGCCGTTGTTTGGTGAGCCAATGGTGCTCGCTATCTATGAAGATCACCCGGGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACT < 2:640293/137‑1 gggGGCGCTGGTGGAGGAGAGCGAAGCATTCATTGAAGTGCCGTTGGTTGAGGAGGCAATGTTGCTGGCTAGCTAGGATGATCACCCGTGGGCGAACCGCGAGTGCGGACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGA < 2:456691/140‑1 GGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGC > 2:334990/1‑143 GGCGCTGGCGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACAGATGGCCGATCTGGCACGGGCACAACTGCCGAGGC > 2:328934/1‑143 TCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCGGCAAACTCGATTGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4158783‑4158921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGC > NC_000913/4158928‑4159069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |