mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 37.0% | 65.5 / 75.4 | 93 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 9 (0.240) | 8/272 | 3.3 | 28.1% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 4038811 | 24 (0.610) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 9 (0.240) | 8/272 | 3.3 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 227052 | 18 (0.450) | 9 (0.240) | 8/272 | 3.3 | 34.3% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 4426579 = | 66 (1.670) | 4 (0.110) | 4/258 | 4.7 | 6.0% | intergenic (+22/+49) | rplI/yjfZ | 50S ribosomal subunit protein L9/protein YjfZ |
| ? | NC_000913 | 4426606 = | 65 (1.810) | intergenic (+49/+22) | rplI/yjfZ | 50S ribosomal subunit protein L9/protein YjfZ | |||||
| * | ? | NC_000913 | 4332016 = | NA (NA) | 4 (0.110) | 4/266 | 4.8 | NA | noncoding (2/32 nt) | other | REP326 |
| ? | NC_000913 | 4332047 = | NA (NA) | intergenic (+43/‑69) | proP/pmrR | osmolyte:H(+) symporter ProP/putative bitopic inner membrane protein | |||||
| * | ? | NC_000913 | 258180 = | NA (NA) | 4 (0.100) | 4/274 | 4.9 | NA | noncoding (496/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 279431 = | NA (NA) | noncoding (500/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 4439149 = | 66 (1.670) | 4 (0.100) | 4/278 | 5.0 | 5.7% | coding (114/555 nt) | ytfJ | protein YtfJ |
| ? | NC_000913 | 4439177 = | 68 (1.760) | coding (86/555 nt) | ytfJ | protein YtfJ | |||||
| * | ? | NC_000913 | = 3946053 | 3 (0.080) | 5 (0.130) | 4/276 | 5.0 | 63.2% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 5 (0.130) | 4/276 | 5.0 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 4520483 = | 40 (1.010) | 4 (0.110) | 3/250 | 5.1 | 10.1% | intergenic (‑159/+188) | yjhU/yjhF | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF |
| ? | NC_000913 | 4520522 = | 36 (1.030) | intergenic (‑198/+149) | yjhU/yjhF | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF | |||||