| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 568,268 | IS1 (–) +9 bp | 100% | intergenic (+21/‑39) | renD → / → emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 19796 = | NA (NA) | 30 (0.870) | 27/262 | NT | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 568276 | 0 (0.000) | intergenic (+29/‑39) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 42 (1.200) | 35/264 | NT | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 568268 = | 0 (0.000) | intergenic (+21/‑47) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||
AGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT > NC_000913/19655‑19930 | gtatTAGTGCTACATTACGACTGTTTCGACGCGGGTCATTATGTGCGCCATTGAAACATTGTTTCCATAGGTACGCTGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTgg < 2:603980/141‑1 (MQ=255) ttGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTCCTTCCTTCCTGGGGATGCTGAACAGAGTAGTAATTACTGGTAATGAc > 1:608926/1‑143 (MQ=255) tGTACCTTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACt < 1:345368/143‑1 (MQ=255) gTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTc > 1:389675/1‑143 (MQ=255) aTTACCACGCTTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAAGAGATGAATCTGATTACTTCCTTCATGGGGATGCTGCAAAGAGTAGTAATTGCTGGTAATGACTCCAAc < 2:273161/143‑1 (MQ=255) aTTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTTCTTCATGGGGATGCTGAATAGAGTAGTAATTGCTGGTAATGACTCCAGTTTATTGATa > 2:278631/1‑143 (MQ=255) ttttGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAg < 2:529612/143‑1 (MQ=255) gCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGt > 1:516852/1‑143 (MQ=255) tCATGATTTGCGCGTGTGAGACGTTGTTTCCGTATGTACGCGGGCGAATGAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc < 2:464868/143‑1 (MQ=38) acttGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATGACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATa < 2:560212/141‑1 (MQ=255) gagaCATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc > 2:135000/1‑143 (MQ=255) aTTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt > 1:629125/1‑143 (MQ=255) tttCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTACTTGCGGCTAATGACTCCAACTTATTGAAAGTGTTTTATGTTCAGCTCATGCCCGATGACCTTGTCAta > 2:557574/1‑142 (MQ=37) tttCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAACAGTAGTAATTGCTGGTAATGACTCCTACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATg < 2:649098/143‑1 (MQ=255) tgccATATGGAGGCCGGCGAATAAAGAGAGGAAGCTGATTACTACTTTTTTCGGTATGCTGAAAAGAGTAGTAATTGCTGGTAATGACGACAATGTATTGATAGTGTCTTATGTTCAGATAATGCCCGATGACTTTGTCATGc < 2:267464/141‑1 (MQ=21) cgcgGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGATCAGATAATGCCCGATGACTTTGTCATGCAGCTCAACCGa > 2:171770/1‑143 (MQ=255) cgcgGGCGAATAAAGAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTCATTGATAGTGTTTTATGTTCAGATAATGCCCGCTGACTTTGTCATGCAGCCCCACCgc > 1:146745/1‑142 (MQ=255) cgGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGTTAATGCCCGATGACTTTGTCATGCAGCTCCACCGAtt < 2:516852/143‑1 (MQ=255) gCGAATAAATAGAGGAATCTGATGACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTg < 1:124563/143‑1 (MQ=255) aataaataGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTgaga > 2:403324/1‑143 (MQ=255) agagGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAg < 2:163540/143‑1 (MQ=255) gAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCACCTTATGGACAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCACCTCCACCGATTCTGCGCACGACAGCGAc > 2:310761/1‑143 (MQ=21) tGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCAACGATTTTGAGAACGCCAGCGACTTCCg > 2:115352/1‑143 (MQ=255) gagtACTTCCTTCATGGGGATGCGGAAAAGAGTAGTAATTGCTGGTAATGACGCCAACTTATTGATAGTGTTTTATTTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGt < 2:550629/140‑1 (MQ=255) ttttgttccttcATGGGGATGCTGAAAAGGGTAGCAATTGCTGGTAATGCCTCCAACTTATTGATCGGGTGTGAGGTTCGGATAAGACCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTc < 2:408979/138‑1 (MQ=17) ttccttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGGCCCAGc > 1:518923/1‑143 (MQ=255) cttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGt > 2:344115/1‑143 (MQ=255) ttcATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTg > 1:649253/1‑143 (MQ=255) tctagaaaGAGTAGTAATTGCTGGGAATGACTCCAACTTATTGTTAGTGTTTTTTGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGACCGACAGCGACTTCCGTCCCAGCCGTGCCAGGtgctgc < 2:673184/138‑1 (MQ=14) tGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCt < 1:642/143‑1 (MQ=255) tagtaATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAg < 1:668148/143‑1 (MQ=38) gagtaATTGCTGGTAATGACGCCAACTTATTGATAGTGTTGTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAg < 2:48630/142‑1 (MQ=255) taATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGtt > 1:629464/1‑143 (MQ=35) | AGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT > NC_000913/19655‑19930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |