Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,049,989 A→C 7.0% noncoding (91/109 nt) spf → small regulatory RNA Spot 42

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,049,9890AC 7.0% 214.1 / 9.3 87noncoding (91/109 nt)spfsmall regulatory RNA Spot 42
Reads supporting (aligned to +/- strand):  ref base A (37/44);  new base C (3/3);  total (40/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.79e-03

AAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAA  >  NC_000913/4049847‑4050131
                                                                                                                                              |                                                                                                                                              
aaaTTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTaa                                                                                                                                                >  2:326568/1‑143 (MQ=255)
 aaTTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAAt                                                                                                                                               <  2:318296/143‑1 (MQ=255)
   ttACAATAAGTGCTTCCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAAGGTACAGAGGCAAGATGTTCTACATTTCAGACCTTTTACTTCACGTAATCGGATTTTGCTGAATATTTTAGCCGCCCCAGTCAGTAATGa                                                                                                                                             <  1:608583/143‑1 (MQ=255)
   ttACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGa                                                                                                                                             <  1:608550/143‑1 (MQ=255)
      cAAAAAGTGTTTTGTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGGAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTg                                                                                                                                          <  2:679544/143‑1 (MQ=255)
       aaaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTgg                                                                                                                                         <  1:139833/143‑1 (MQ=255)
       aaaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTgg                                                                                                                                         >  2:414336/1‑143 (MQ=255)
        agaaGGGCTTGCGGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTggg                                                                                                                                        <  2:215416/141‑1 (MQ=255)
        aaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTggg                                                                                                                                        >  1:339224/1‑143 (MQ=255)
         aaaGTGCTTTCTGAACTGAACAAAAAAGAGTTGGGTTCGACACATAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCATTACTGACTgggg                                                                                                                                       <  2:296622/143‑1 (MQ=255)
         aaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCATCACTGACTgggg                                                                                                                                       <  1:568357/143‑1 (MQ=255)
          aaGTGCTTTCTGAACCGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGc                                                                                                                                      >  2:571723/1‑143 (MQ=255)
            gtacTTTCTGAACGGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGt                                                                                                                                    <  2:188072/140‑1 (MQ=255)
            gTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGt                                                                                                                                    <  1:495789/143‑1 (MQ=255)
              gCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCATTACTGACTGGGGCggct                                                                                                                                  <  1:42346/143‑4 (MQ=255)
                tttCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGttttt                                                                                                                                >  1:77908/1‑143 (MQ=255)
                tttCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATGTTAGCCGCCGCAGTCAGTAATGACTGGGGCgttgtt                                                                                                                                >  1:562135/1‑143 (MQ=255)
                  tCTGAGCTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTa                                                                                                                              <  2:518011/143‑1 (MQ=255)
                  tCTGAACTGAACAAAAAAGAGTAACGTCAGCCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTa                                                                                                                              <  1:37743/143‑1 (MQ=255)
                       actgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGCCCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTggg                                                                                                                         <  2:588755/143‑1 (MQ=255)
                       actgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTTTTggg                                                                                                                         >  2:565730/1‑143 (MQ=255)
                       actgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTggg                                                                                                                         <  1:436674/143‑1 (MQ=255)
                         tgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCTGACTTGGCGGGCGAGCTTTGCCGCCCCGGTCAGTAATGACTGGGGCGTTTTTTATTTGGCg                                                                                                                       >  1:283629/1‑143 (MQ=255)
                         tgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGGTTTGGCTGAATATTTTAGCCGCCCCAGTCAGGAATGACTGGGGCGTTTTTCATTGGGCg                                                                                                                       >  2:378589/1‑143 (MQ=255)
                             cAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTGTTATTGGGCgaaag                                                                                                                   >  1:413571/1‑143 (MQ=255)
                              aaaaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaaga                                                                                                                  >  1:395612/1‑143 (MQ=255)
                               aaaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaagaa                                                                                                                 <  1:589066/143‑1 (MQ=255)
                                 aaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGaaagaaaa                                                                                                               <  2:181797/143‑1 (MQ=255)
                                  aaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGaaagaaaag                                                                                                              >  2:485660/1‑143 (MQ=255)
                                  aaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGACGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTGTTTTCTTGGGCGatagaaaag                                                                                                              >  1:85307/1‑143 (MQ=255)
                                   aaagTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGaaagaaaaga                                                                                                             <  1:497974/141‑1 (MQ=255)
                                    gagTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGAt                                                                                                            <  1:127739/143‑1 (MQ=255)
                                     agTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATc                                                                                                           <  2:671208/143‑1 (MQ=255)
                                          aGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGtga                                                                                                      >  2:468054/1‑141 (MQ=255)
                                          aGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTaa                                                                                                      >  1:614207/1‑143 (MQ=255)
                                          aGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTaa                                                                                                      <  2:180584/143‑1 (MQ=255)
                                             tAGTCGCGTCGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGc                                                                                                   <  1:35340/143‑1 (MQ=255)
                                             tAGTCGCGGAGGGTACAGAGGTAGGATTTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCAAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGc                                                                                                   <  2:301616/143‑1 (MQ=255)
                                                tCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGATTTTTATTGGGACAAAGAAAAGATCCGTAATGCCTg                                                                                                >  2:128191/1‑143 (MQ=255)
                                                   tgTAGGGTACAGAGGTAAGATGTTCTATGTTTCGGACCTTTTCCTTCACGTAAGCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATg                                                                                             <  2:93145/142‑1 (MQ=255)
                                                    gTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATgc                                                                                            <  1:539076/143‑1 (MQ=255)
                                                       gggTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCt                                                                                         <  2:549041/143‑1 (MQ=255)
                                                       gggTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGACGCGCt                                                                                         >  1:579776/1‑143 (MQ=255)
                                                          tACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGCAAGAAAAGATCCGTAATGCCTGATGCGCTATg                                                                                      >  2:638179/1‑143 (MQ=255)
                                                          tACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATGTGGCTGAATATATTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGCAACGAGATGCCTGATGCGGTATg                                                                                      >  2:3609/1‑143 (MQ=255)
                                                          tACAGAGGTAAGATGTACTATCTTTCAGACCTTTTACTTCACGTCATCGGACTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTAGGCGAAAGCAACGATCCGTAATGCCTGATGCGCTATg                                                                                      >  2:244202/1‑143 (MQ=255)
                                                              gagGTAAGATGTCCTATCGTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTa                                                                                  <  2:85827/143‑1 (MQ=255)
                                                                ggTAGGATGTGGTATCTTTCAGACCATTTCCTTCACGTAATCGTATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGTGCGTTTTTTGTTGGCCCAAAAAAAAGATCCGTAATGCCTGATGCGCTATGTTTATc                                                                                <  2:145035/143‑1 (MQ=255)
                                                                 gTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCa                                                                               <  1:148081/143‑1 (MQ=255)
                                                                  tAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAg                                                                              <  1:640283/143‑1 (MQ=255)
                                                                  tAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCAGTCATGCCTGATGCGCTATGTTTATCAg                                                                              >  2:9790/1‑143 (MQ=255)
                                                                   atgtggTTTTAGCTGTCAGGCCTTTTACTTCACGTAATCGGATTGGGCTGAATATTTTAGCCGCCCCAGTCAGGAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAgg                                                                             <  2:103508/138‑1 (MQ=255)
                                                                                 ttCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCACAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTCATGCCTGATGCGCTATGTTTATCAAGACAACGGTAGACtt                                                               >  2:47287/1‑143 (MQ=255)
                                                                                    aGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCTTTATGCCTGATGCGCTATGTTTATCAGGCCAATGGGAGAATTGTa                                                            >  1:461621/1‑143 (MQ=255)
                                                                                    aGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATGAGGCCAACGGTAGAATTGTa                                                            >  1:620850/1‑143 (MQ=255)
                                                                                    aGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTa                                                            >  2:261033/1‑143 (MQ=255)
                                                                                    aGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCAATGTTTATCAGGCCAACGGTAGAATTGTa                                                            >  2:655979/1‑143 (MQ=255)
                                                                                       ccTTTTACTTCACGTAGTCGGATTTGACTGCAGGTTTTGGCCGGCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATc                                                         <  1:280781/143‑1 (MQ=255)
                                                                                       ccTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATc                                                         >  1:445142/1‑143 (MQ=255)
                                                                                          tttACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTac                                                      >  2:19283/1‑142 (MQ=255)
                                                                                           ttACATCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTAtt                                                     <  1:635447/143‑1 (MQ=255)
                                                                                              cTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGaa                                                  <  2:614207/143‑1 (MQ=255)
                                                                                              cTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCCGCCGCCCCACCAGCATGAGGCCGACGAGAGAATTGTAGTCTATTGaa                                                  >  1:308395/1‑143 (MQ=255)
                                                                                               ttCACGTAAACGGATTTGGCTGGATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTGTTTTATTGGGCGCAAGAAAAGCTCCGTAATGCTTGATGCGCTCTGTTTATCAGGCCACCGCTAGAGTTGAGCTCTATTGGAt                                                 >  2:38408/1‑143 (MQ=255)
                                                                                                  aCGGAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTa                                              <  1:446374/143‑1 (MQ=255)
                                                                                                   cGTAATCGGATTTTTCTTAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTAc                                             <  1:419210/143‑1 (MQ=255)
                                                                                                   cGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTAc                                             <  1:505378/143‑1 (MQ=255)
                                                                                                    gTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACg                                            <  1:292026/143‑1 (MQ=255)
                                                                                                        tCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGcc                                        >  2:69508/1‑143 (MQ=255)
                                                                                                           caTTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCTCATTCTAAATAGCATATTAGAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGa                                     <  1:494207/142‑1 (MQ=255)
                                                                                                                  cTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGAGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTATAATCTATTGAATATACAGGCCGGGTACGAca                              >  2:251227/1‑143 (MQ=255)
                                                                                                                      atatTTTAGCCGCCCAAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATGTACGGGCCGGATACGCCACATc                          >  2:573110/1‑143 (MQ=255)
                                                                                                                           ttAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGca                     <  1:326958/143‑1 (MQ=255)
                                                                                                                           ttAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGca                     >  1:107118/1‑143 (MQ=255)
                                                                                                                              gccgccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACaa                  <  1:655979/143‑1 (MQ=255)
                                                                                                                               ccgccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAg                 >  2:635248/1‑143 (MQ=255)
                                                                                                                               acgccCCAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATAGGCCGCATGCGGCACAAg                 >  1:119236/2‑143 (MQ=255)
                                                                                                                                 gccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCCATCGAATCTACGGGCCGGATACGCCACATCCGGCACAAGCa               >  2:464287/1‑143 (MQ=255)
                                                                                                                                  ccccAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCAt              >  1:256310/1‑143 (MQ=255)
                                                                                                                                   cccAGTCATTACTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCAtt             >  1:622849/1‑143 (MQ=255)
                                                                                                                                   cccAGTCAGTAATGGCTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCAtt             <  1:542693/143‑1 (MQ=255)
                                                                                                                                   cccAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGGCGGATACGCCACATCCGGCACAAGCAtt             >  1:94371/1‑143 (MQ=255)
                                                                                                                                     gagtcagtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTaa           <  2:631155/142‑1 (MQ=255)
                                                                                                                                      agtcaggAATGACTGGGGCGGTTTTTATTTGGCGAAAGAAAAGATCCGTAATGCCTGATGCGTTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAg          <  2:526953/143‑1 (MQ=255)
                                                                                                                                       gtcagtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGGATTGTAATCTATTGAATTTACGGGGCGGAGACGCCACATCCGGCACAAGCAGTAAgg         >  1:572604/1‑143 (MQ=255)
                                                                                                                                       gtcagtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAgg         <  1:485660/143‑1 (MQ=255)
                                                                                                                                         cagtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCa       <  1:282080/143‑1 (MQ=255)
                                                                                                                                          tgttaTGACTTGGGCGTTTTTTTTTTGGCGATAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCaa      <  2:537457/139‑1 (MQ=255)
                                                                                                                                          agtAAGGCCTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCaa      <  2:463099/143‑1 (MQ=255)
                                                                                                                                              aTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCAGAAGCATTAAGGCAAGaaa  >  1:301219/1‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                              
AAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAA  >  NC_000913/4049847‑4050131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: