New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2520613 =	55 (0.830)	3 (0.050)	3/252	NT	5.4%	coding (60/1416 nt)	gltX	glutamate‑‑tRNA ligase
	?	NC_000913	2520653 =	52 (0.820)					coding (20/1416 nt)	gltX	glutamate‑‑tRNA ligase

GAAAATCAAAACTCGCTTCGCGCCAAGCCCAACAGGCTATCTGCACGTTGGCG‑‑GCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2520670‑2520613 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑g‑‑gcgcgAAGCGAGTTTTGATTTTCATGAAATGGCCTTACGTTTAGAAAGATGCCGACAACCGGCAAATCCTGGAAAAATTAAGTGGGCGATATTCTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTA  >  NC_000913/2520653‑2520794                                                                                                                                                                                                            GAAAATCAAAACTCGCTTCGCGCCAAGCCCAACAGGCTATCTGCACGTTGGCG‑‑GCGCGAAGCGAGTTTTGATTTTCATGAAATGGCCTTACGTTTAGAAAGATGCCGACAACCGGCAAATCCT                                                                               >  1:160008/1‑123 GAAAATCAAAACTCGCTTCGCGCCAAGCCCAACAGGCTATCTGCACGTTGGCG‑‑GCGCGAAGCGAGTTTTGATTTTCATGAAATGGCCTTACGTTTAGAAAGATGCCGACAACCGGCAAATCCT                                                                               <  2:160008/123‑1     ATCAAAACTCGCTTCGCGCCAAGCCCAACAGGCTATCTGCACGTTGGCGGCGCGCGAAGCGAGTTTTGATTTTCATGAAATGGCCTTACGTTTAGAAAGATGCCGACAACCGGCAAAACCCGGAAAAATTCAGTGGGCGATAT                                                         >  2:349044/1‑143                                                         CGCGAAGCGAGTTTTGATTTTCATGAAATGGCCTTACGTTTAGAAAGATGCCGACAACCGGCAAATCCTGGAAAAGTTAAGTGGGCGATATTCTATCACTCCCGCCTGATTCATCAATGGAGTTCGGGTTCATCCCTTACTCA     >  2:70992/1‑143                                                          GCGAAGCGAGTTTTGATTTTCATGAAATGGCCTTACGTTTAGAAAGATGCCGACAACCGGCAAATCCTGGAAAAATTAAGTGGGCGATATTCTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCAT    >  1:1049593/1‑143                                                            GAAGCGAGTTTTGATTTTCATGAAATGGCCTTACGTTTAGAAAGATGCCGACAACCGGCAAATCCTGGAAAAATTAAGTGGGCGGTATTCTATCACTCCCGCCTGATTCCTCAATGTAGCTCGGGTTTCTACCTTACGCATTA  >  1:503625/1‑143                                                                                                                                                                                                            GAAAATCAAAACTCGCTTCGCGCCAAGCCCAACAGGCTATCTGCACGTTGGCG‑‑GCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2520670‑2520613 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑g‑‑gcgcgAAGCGAGTTTTGATTTTCATGAAATGGCCTTACGTTTAGAAAGATGCCGACAACCGGCAAATCCTGGAAAAATTAAGTGGGCGATATTCTATCACTCCCGCCTGATTCCTCAATGTAGTTCGGGTTTCTACCTTACGCATTA  >  NC_000913/2520653‑2520794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.