New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4296399 =	NA (NA)	3 (0.050)	3/250	NT	NA	noncoding (1/37 nt)	other	REP321k
	?	NC_000913	4296430 =	NA (NA)					noncoding (32/37 nt)	other	REP321k

AAGGTTTTATCGAGAAGAACAAGCAAAAGGCGCTGCACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4296545‑4296399 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCC  >  NC_000913/4296430‑4296570                                                                                                                                                                                                                                                                                                  AAGGTTTTATCGAGAAGAACAAGCAAAAGGCGCTGCACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTGACCACAGGCGAATATTGGCCTGATAAGACGCGGCAAGCGTGGCAT                                                                                                                                                   >  2:562466/1‑143   GGTTTTATCGAGAAGAACACGCTAATGGCGCTGCACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCA                                                                                                                                                 <  2:67570/143‑1   GGTTTTATCGAGAAGAACAAGCAAAAGGCGCTGCACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCA                                                                                                                                                 <  1:1042972/143‑1   GGTTTTATCGAGAAGAACAAGCAAAAGGCGCTGCACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCA                                                                                                                                                 >  2:691941/1‑143   GGTTTTATCGAGAAGAACAAGCAAAAGGCGCTGCACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCA                                                                                                                                                 >  2:1252801/1‑143   GGTTTTATCAAGAAGAACAAGCAAAAGGCGCTGCACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCA                                                                                                                                                 <  2:1219332/143‑1    GTTTTATCGAGAAGAACAAGCAAAAGGCGCTGCACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG                                                                                                                                                >  2:1075986/1‑143     TTTTATCGAGAAGACCAAGCAAAAGGCGCTGGACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG                                                                                                                                               <  1:150267/143‑1     TTTTATCGAGAAGAACAAGCAAAAGGCGCTGCACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG                                                                                                                                               >  2:525433/1‑143      ttgATCGAGAAGAACAAGCCAAAGGCGCTGCACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGCGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC                                                                                                                                              <  1:922530/140‑1                                                                        ACCGTGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG                                                                                                                                                <  2:567744/75‑1                                                                        ACCGGGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG                                                                                                                                                >  1:567744/1‑75                                                                                       TTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGC                                                             >  1:1153781/1‑143                                                                                                    CCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAGTTTTCAAACTCTTCACACCCGGTATCCAGCCCTTACGTACACCTCAGGTACAAACAGTGCAGCGCCTTTTGCg                                                >  2:1168573/1‑142                                                                                                                 TAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTATCTTAACCGTTGGTTCATTTTTCAAACTCTTCCCACCCGGTATCAAACCCTTCCATACAGCTCAGGCTCAACCCGTGCAGCGCCTTTTGCTTGTTCTTCaccat                                   >  2:737678/1‑138                                                                                                                                              ATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTTGATAAAACTTTCTTTACTTTTTAAGAACATaa      >  1:465703/1‑141                                                                                                                                               TCAGGCCTATCTTAACCGTTGGTTAATTTTTAAAACTCATCACACCCGATATCAAACACTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGAATACGAACATCAT     >  1:12606/1‑143                                                                                                                                                 AGGCCTAGCTTAACCGTTCGTCCAGTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTC   <  2:1100375/143‑1                                                                                                                                                  GGCCTATCTTAACCGTTGGTTAATTTTTCCAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCC  <  1:530705/143‑1                                                                                                                                                                                                                                                                                                  AAGGTTTTATCGAGAAGAACAAGCAAAAGGCGCTGCACTGGTTGAACCTGAGCTGTATGGAAGGGTTTGATACCGGGTGTGAAGAGTTTGAAAAATTAACCAACGGTTAAGATAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4296545‑4296399 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAGAACATCATTCC  >  NC_000913/4296430‑4296570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.