New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	226704 =	NA (NA)	3 (0.050)	3/256	NT	NA	noncoding (946/2904 nt)	rrlH	23S ribosomal RNA
	?	NC_000913	226730 =	NA (NA)					noncoding (972/2904 nt)	rrlH	23S ribosomal RNA

AGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCC  >  NC_000913/226562‑226745                                                                                                                                               |                                          aGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACAGGAGAATGTTATCACCGGAGacac                                           >  1:786053/1‑143 (MQ=17)   cTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCCTCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCACGACCTACCAAGCCGACGCAAAGAGCGAGTACCGGAGCATGTTATCACGGCAGacacgc                                         >  2:1278123/1‑141 (MQ=11)   cTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGacaccc                                         >  2:867033/1‑141 (MQ=17)      gTTCTCCCGGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAcggc                                      <  2:411269/143‑1 (MQ=17)        gctcCCCGAAGGGTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGCCTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACAcggcgg                                    <  2:966559/142‑1 (MQ=12)             ccGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTAACACGGGCGACACACGGCGGGTGCt                               >  2:954917/1‑143 (MQ=17)                aaaGCTATTTAGGAAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGCCTTACCAACCCGATGCAAAATGCGAATACCGCAGAATCTTACCACTGGAGACACACGGCGGGAGCTAAc                            >  2:1122743/1‑143 (MQ=11)                  aGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTACcga                          >  2:1092941/1‑142 (MQ=17)                       tttATGTAGCGCCTCGTAACCTCTTCTCCGTCGGTAGAGCACTGTTTCGGCAAGGTTGTCATCCCGACTTACCAACCCGATGCAAACTGCTAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAAcgtccgtc                     <  2:2735/143‑1 (MQ=11)                       tttAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCCAGGGGGTCATCCCGACTCCACAACCCGATGCACACTGCGAATACCGGAGAACGTTATCACGGGCGACACACCCCGGGCCCTAGcgtccgtc                     >  2:825404/1‑143 (MQ=11)                       tttAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAAcgtccgtc                     <  1:518099/143‑1 (MQ=32)                       tgcaGGTAGGGCCTCGTGAACGCATCGCCGGGGGTAGAGCACTGGTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAAcgtccgtc                     <  2:1279716/140‑1 (MQ=11)                            ggaGCGCCGCGTGAACGCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGaa                <  2:1105252/141‑1 (MQ=12)                            gTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTgga                >  1:741901/1‑141 (MQ=17)                             gaGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAag               <  1:26388/142‑1 (MQ=17)                              aGCGCCTCGTGACCTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAaga              <  1:269071/143‑1 (MQ=17)                               gcgcCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAagag             <  2:187719/143‑1 (MQ=32)                               gcgcCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAagag             <  1:902434/143‑1 (MQ=32)                                    tCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCGCGGGAGACACACGGCGGGTGCTAACGCACGTCGTGAAGAGGGaac        >  2:371056/1‑142 (MQ=12)                                    tCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGaaa        >  1:335731/1‑143 (MQ=32)                                     cGTGAACTCATCGCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGGCATCCCGACGTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAaac       <  2:406680/143‑1 (MQ=12)                                          aCTCATCTCCGGGGGGAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAAccc  >  1:1083408/1‑143 (MQ=14)                                                                                                                                               |                                          AGCTGGTTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCC  >  NC_000913/226562‑226745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.