New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2729475 =	33 (0.500)	4 (0.070)	4/244	NT	9.4%	intergenic (‑31/+141)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA
	?	NC_000913	= 4168363	47 (0.770)					intergenic (+163/‑9)	rrsB/gltT	16S ribosomal RNA/tRNA‑Glu

CTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGT  >  NC_000913/4168226‑4168505                                                                                                                                           |                                                                                                                                                cTCACACAGATTGTCTGATAGAAAGTGAAAA‑CAAGCGGGTGTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAatctt                                                                                                                                            >  1:866631‑M2/1‑138 (MQ=255)  tCACACAGATTGTCTGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttc                                                                                                                                           >  1:613490‑M2/1‑137 (MQ=255)  tCACACAGATTGTCTGATAGAAAGTGAAAAGCAAG‑ACGTTTACGCGTTGGGAGAGAGGCTGAAGAGAACGAGGCCGTTCGCTTTCTATCAGTGAAAGCTCACCCTACACGAAAGTAGCACAGGACGCGGGATAGACAAtgttt                                                                                                                                           >  2:377793/1‑142 (MQ=11)    acacaGATTGTCTGATAGAGAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgt                                                                                                                                         >  2:184030‑M2/1‑135 (MQ=255)    acacaGATTGTCTGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATCTCACGCAACGCGTGGTAAGCAattttcgg                                                                                                                                         <  1:1227720‑M2/143‑9 (MQ=255)     cacaGATTGTCTGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtg                                                                                                                                        <  1:153191‑M2/143‑10 (MQ=255)      acaGATTGTCTGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgt                                                                                                                                       >  2:987256‑M2/1‑133 (MQ=255)      acaGATTGTCTGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgt                                                                                                                                       <  1:901843‑M2/143‑11 (MQ=255)       caGATTGTCTGATAGAAAGTGAAAAGCAAG‑GAGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCATGATAAGCAATTTTCGTGTc                                                                                                                                      >  2:1049035/1‑143 (MQ=255)        aggttGTCTGATAGAAAGTGAAAAGCAAG‑GCGTGTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTcc                                                                                                                                     <  2:81007/140‑1 (MQ=255)        aGATTGTCTGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCATTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATACGCAATTTTCGTGTcc                                                                                                                                     >  2:475349/1‑143 (MQ=255)         gATTGTCTGATACAAAGTGAACAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTccc                                                                                                                                    <  1:1091896/143‑1 (MQ=17)           ttGTCTGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGCGATAAGCAATTTTCGTGTCCCCt                                                                                                                                  >  1:1107619/1‑143 (MQ=255)             gTCTGATGGAAAGTGAAAAGCAAG‑GCGTTTACGGGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTc                                                                                                                                <  2:299473/143‑1 (MQ=17)              tCTGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGGTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATACGCACTGTTCGTGTCCCCTGCg                                                                                                                               >  1:1075330/1‑143 (MQ=14)               cTGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGt                                                                                                                              <  2:291856/143‑1 (MQ=37)                tGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTc                                                                                                                             >  2:1276678/1‑143 (MQ=38)                tGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGATGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCAACCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGGGTCCCCTTCGTc                                                                                                                             >  2:1043617/1‑143 (MQ=255)                  atggAAAGTGATAAGCAAG‑GCGTTTACGCGTTGGGAGTGATGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTGATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTa                                                                                                                           <  2:1078709/140‑1 (MQ=255)                  aTAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTa                                                                                                                           >  2:1060194/1‑143 (MQ=35)                    aGATAGTGGAAAGCAAG‑GCGTTTACGCGTTGGGAGTCAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTaga                                                                                                                         <  2:689817/143‑1 (MQ=12)                    aGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTaga                                                                                                                         >  1:1118842/1‑143 (MQ=34)                    aGAAAGTGAAAAGCAAG‑GCGATTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATAGCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTaga                                                                                                                         <  1:33039/143‑1 (MQ=18)                     gagaGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTagag                                                                                                                        <  2:979971/140‑1 (MQ=17)                     gAAAGTGGAAAGCAAG‑GCGTTTGCGCGTTGGGAGTGAGTCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTagag                                                                                                                        <  2:687977/143‑1 (MQ=12)                     gAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTagag                                                                                                                        <  2:476342/143‑1 (MQ=32)                       atgTGAAAGGCCAG‑GCGTTTACGCGTTGGGAGTGAGGATTAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGTTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTTGTGTCCCCTTCGTCTAGAGGc                                                                                                                      <  2:183993/141‑1 (MQ=11)                       aaGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGc                                                                                                                      >  1:586099/1‑143 (MQ=32)                          tGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAAGCCCa                                                                                                                   >  2:1020220/1‑143 (MQ=17)                          tGAAAAGCAAG‑GCGTGTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCa                                                                                                                   <  1:126414/143‑1 (MQ=17)                            aaaaGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAgg                                                                                                                 >  1:890175/1‑143 (MQ=32)                            aaaaGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGCGATAAGCAATTTTCGTGTCCCCTTCGTCTAGCGGCCCAgc                                                                                                                 >  2:10487/1‑142 (MQ=17)                            aaaaGCAAG‑GCGTTTACGCGTGGGGATTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGccacgg                                                                                                                 >  2:781406/1‑139 (MQ=12)                             aaaGCAAG‑GCTTTTACGCGTTGGGAGTGAGGCTGCAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCGCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGa                                                                                                                <  1:1201746/143‑1 (MQ=9)                             aaaGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGATAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGa                                                                                                                <  2:637583/143‑1 (MQ=14)                             aaaGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCgggg                                                                                                                >  1:1258996/1‑142 (MQ=14)                             aaaGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGa                                                                                                                >  1:996309/1‑143 (MQ=31)                             aaaGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATCAATGCTCACCCCACACGAAAATATCACGCAACGCGTGATCAGCAATTTTCGTATCCACTTCGTCCAGAGGCACAGGa                                                                                                                >  2:510930/1‑143 (MQ=11)                               aggaaG‑GCGCGTACGCGTGGGGAGTGGGGCTGAAGCGAAGAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGACAATATCACGCAACGCGTGCTAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGaca                                                                                                              <  2:1056907/140‑1 (MQ=1)                                                                          ggcggctCGTTTGCTGTTAGTGACAGCTCACCCTCCTCGAGAATAGCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAggg                                                                   <  2:129365/137‑1 (MQ=1)                                                                          ggCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGATTCGAA‑CCCCtgtta                                                                   <  1:1077709/143‑5 (MQ=1)                                                                                   ctatCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATGTTCGTGTCCCCTTCGCCCAGACCCCCAGGACACCTCCCTTTCACGCCGGTAACAGTGC‑TTCGAATCCCCTAGGGGACGCCACt                                                          <  1:67886/140‑1 (MQ=1)                                                                                                        cccTACACGAAAATATCACGCAACGCGTGATAAGCGtttttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgctattcacttttcatcagacaat                                      <  2:274279‑M2/143‑108 (MQ=255)                                                                                                          cTACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactcccaacgcgtaaacgccttgctattcacttttcatccgacaatct                                    <  2:968293‑M2/143‑110 (MQ=255)                                                                                                           tACACGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttattctcttcagcctcactccccacgcgtaaacgccttgctattcacttttcctccggcaatctg                                   <  2:881565‑M2/143‑111 (MQ=255)                                                                                                              acGAAAATATCACGCAACGCGTGATAAGCAattttcgtgtagggtgagctttcattaatagaaagcgaacggccttatgctcttcagcctcactcccaacgcgcacacgccttgctactcccgtttcatcagcccatcagtgc                                <  2:1031039‑M2/143‑114 (MQ=255)                                                                                                                gagaaTATCACGCAACGCGGTATAAGCAGTTTTCGTGTCCCCTGCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGAcc                             <  2:301189/140‑1 (MQ=1)                                                                                                                  agatatCACGCAAGGCGTGATAAGCAATTTTCGTGGCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCtt                           <  1:1240849/141‑1 (MQ=2)                                                                                                                     tatCACGCAACGCGTGATAAGCTATTGTCGTGGCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCTCTAGGGGGCGGCACTTTCTGGTTTGTGAGTGAAAGTCACCGACCTTAat                        <  1:358011/143‑1 (MQ=11)                                                                                                                     tatCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAat                        <  1:1198259/143‑1 (MQ=32)                                                                                                                     tatCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAat                        <  1:709713/143‑1 (MQ=32)                                                                                                                       tCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCGAGGACACCGCCCGTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGGCACGTGGTGGTTTGTGAGTGAAAGTAGCAGAACTTAatag                      >  2:529753/1‑142 (MQ=11)                                                                                                                       tCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAatat                      >  1:889654/1‑143 (MQ=32)                                                                                                                        cACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATAtc                     >  2:684152/1‑143 (MQ=32)                                                                                                                         aCGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGGCGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATAtct                    >  1:768482/1‑143 (MQ=17)                                                                                                                         aCGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGCCGCCACTTGCTGGTTTGTGAGTGAACGTCGCCGACCTTACTAtct                    >  2:720577/1‑143 (MQ=12)                                                                                                                         aCGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAatatgt                    >  1:824898/1‑141 (MQ=17)                                                                                                                          cGCATCCCGTCATCAGCAATTCTCGTTCCCCCTTCTTCTAGATCCCCAGGACACCGCCCTTTCACGGCTGTAACAGGTG‑TTCGATTCCCCTATGGGACGCCACTTGCTTGTTTGTGAGTGAAAGTCGCCGACCTTAATAtctc                   <  1:366844/143‑1 (MQ=11)                                                                                                                            cAAGGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGCCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATAcctcca                 >  2:396089/1‑141 (MQ=12)                                                                                                                            cAACGCGTGACAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCaa                 <  2:1006899/143‑1 (MQ=17)                                                                                                                             aaCGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCaaa                >  2:783483/1‑143 (MQ=32)                                                                                                                              aCGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCaaaa               <  2:171714/143‑1 (MQ=32)                                                                                                                              aCGCGTGATAAGCAATGTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCaaaa               <  2:663635/143‑1 (MQ=17)                                                                                                                                   tgttAATCAAGTGTCGTGTCCCCTTCGTCTAGAGGCCCTGGACTCCGTAGTGTTTCTGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCTATCTGCTATGTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCAt          <  2:1176845/140‑1 (MQ=2)                                                                                                                                       aaGCAATTTTCGTGTCCCCTCCGTCTAGAGGCCCAGGACACCGCCCCTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTc      <  1:1277374/143‑1 (MQ=255)                                                                                                                                         gCAATCGTCGTGTCCCCTGCTTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGCGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCgg    <  2:249695/143‑1 (MQ=14)                                                                                                                                          cAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAGGTCGCCGACCTTAATATCTCAAAACTCATCTTCggg   >  1:1178216/1‑143 (MQ=255)                                                                                                                                          cAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCggg   >  1:1178614/1‑143 (MQ=255)                                                                                                                                          cAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCggg   >  2:220845/1‑143 (MQ=40)                                                                                                                                           aaTGTTCGTGTCCCCCTCGTAGAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGt  <  1:527302/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                CTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAG‑GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGT  >  NC_000913/4168226‑4168505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.