New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3943659	NA (NA)	3 (0.050)	3/260	NT	27.6%	intergenic (+149/‑45)	gltU/rrlC	tRNA‑Glu/23S ribosomal RNA
	?	NC_000913	= 4037518	8 (0.120)					intergenic (+183/‑1)	alaT/rrlA	tRNA‑Ala/23S ribosomal RNA

TGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGA  >  NC_000913/4037376‑4037660                                                                                                                                               |                                                                                                                                               tgtaaaGGTTGACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAATCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATAAATCGAAAGAAACATCTTCGGGTTGTGa                                                                                                                                                <  2:1147267/140‑1 (MQ=255) tGCAGAGGTTCACTGCGAAGTTGTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGGTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGA                                                                                                                                                >  2:1229101‑M2/1‑143 (MQ=255) tGCAAAGGTTCAGTGCGAAGTTTTGCTCTTTAAAAGTGTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTGTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGA                                                                                                                                                >  2:1209024‑M2/1‑143 (MQ=255)  gccaaGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAg                                                                                                                                               <  1:876447/140‑1 (MQ=255)  gCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAg                                                                                                                                               <  1:243459/143‑1 (MQ=39)   cAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAgg                                                                                                                                              >  1:1236800/1‑143 (MQ=39)   cAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAgg                                                                                                                                              <  1:881641/143‑1 (MQ=39)    aaaGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGt                                                                                                                                             >  1:760552/1‑143 (MQ=38)     aatgatCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGtt                                                                                                                                            <  1:784979/138‑1 (MQ=255)     aaGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTGAGCAACACGATAATGAATCGAAAGAAACATCTTCGGGTTGTAAggct                                                                                                                                            >  2:30430/1‑141 (MQ=255)      aGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTAGTGTTGTGAGGTTa                                                                                                                                           >  2:199381/1‑143 (MQ=255)         ttCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGc                                                                                                                                        <  2:543394/143‑1 (MQ=39)           cACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGTATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGa                                                                                                                                      >  1:953345/1‑143 (MQ=25)             cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGACACATCTTCGGGTGCTGACGTTAAACGACt                                                                                                                                    >  2:36469/1‑143 (MQ=11)             cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACt                                                                                                                                    >  1:764001/1‑143 (MQ=37)               gCGAAGTTTTGCTCTTTAACAATCTGGATCAAGCTTAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTaa                                                                                                                                  <  2:67874/143‑1 (MQ=25)               gCGAAGCTTAGCCCTTAAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTaa                                                                                                                                  <  1:247947/143‑1 (MQ=255)                 gAAGTCTTGCTCTGTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc                                                                                                                                <  1:679265/143‑1 (MQ=17)                    gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACACCGAATGTCGCCCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa                                                                                                                             <  1:1271168/143‑1 (MQ=11)                                                                                              aaaTTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttctaaagagcaaatatctcaaacatcac                                                   <  2:558022‑M2/143‑94 (MQ=255)                                                                                                      gCAACACGATGATGCATCGAAAGAAACATCTTCGGGTTGCGAaaatttgagagactcacgaacaactatcgttgttcagtgtttcaattttcagcttgatccagctttttaaagagcaaatatctgcaacatcacccgaacat                                           <  2:224755‑M2/143‑102 (MQ=255)                                                                                                                                   cctggtgttgtgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagagttttaaagagcaaatatctcaatcatcacccgaagatgagttttgagatattaaggcaggtgactt              >  2:1236013‑M2/7‑13 (MQ=255)                                                                                                                                      cGGGTTGAGAaaagttgagggactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttca           >  1:460374‑M2/1‑10 (MQ=255)                                                                                                                                              gAaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttccctcacaaa   <  1:122319‑M2/143‑142 (MQ=255)                                                                                                                                              gAaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaa   <  1:416872‑M2/143‑142 (MQ=255)                                                                                                                                              gAaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaa   <  1:1153391‑M2/143‑142 (MQ=255)                                                                                                                                              gAaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaa   >  1:1017921‑M2/1‑2 (MQ=255)                                                                                                                                              gAaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggggcctttcactcacaaa   <  2:101309‑M2/143‑142 (MQ=255)                                                                                                                                               aaagtttgggagactcacgcacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaac  >  2:1149459‑M2/1‑1 (MQ=255)                                                                                                                                               aaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaac  <  2:987836‑M2/143‑143 (MQ=255)                                                                                                                                               aaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcaggtgactttcactcacaaac  >  1:1022146‑M2/1‑1 (MQ=255)                                                                                                                                               |                                                                                                                                               TGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGA  >  NC_000913/4037376‑4037660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.