| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 9,907 | A→C | 11.4% | intergenic (+14/+21) | mog → / ← satP | molybdopterin adenylyltransferase/acetate/succinate:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 9,907 | 0 | A | C | 11.4% | 105.0 / 9.3 | 61 | intergenic (+14/+21) | mog/satP | molybdopterin adenylyltransferase/acetate/succinate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base A (25/26); new base C (4/3); total (30/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.41e-02 | |||||||||||
CACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGTGG > NC_000913/9771‑10045 | cacGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGACCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGACGAGTGCAAGACGCGACGTTAGCGCATAAAAAAATCCCCCCGAGCgggg > 1:108207/1‑143 (MQ=255) acGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATCCGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGGGCAAGACGCGACGTTAGCGAATAAAAACATCCCCGCGAGCggggg > 2:241749/1‑143 (MQ=255) ggTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAGGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGCTCGGGGGGa < 2:423494/143‑1 (MQ=255) agttttGCCAGCGTACCGTTCTTCATACAGATGCGGGAAGGGGCATACGTGGAAACGGCGCCGGAAGGGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGAtct < 1:356204/141‑1 (MQ=255) aTTTTGGCCAGCGTCCCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGCTCGGGGGGAttt < 1:459079/143‑3 (MQ=255) ttttGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGCTCGGGGGGAttttt < 1:870360/143‑5 (MQ=255) ttttGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCa > 1:762667/1‑143 (MQ=255) ttGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCaaa < 1:1048581/143‑1 (MQ=255) gCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCAACGGAAAGGGCAGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGAGGTCAacac > 1:873221/1‑143 (MQ=255) cAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACaa < 1:520211/143‑1 (MQ=255) gtaccgtacTGCAGTCCGTTGCTGGAGCGTCCTTGCTTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAg < 1:531440/143‑1 (MQ=255) gccgtacGGCACTCAGTTGCGGGAAGGGCCATACGTTTAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTg < 2:538515/142‑1 (MQ=255) cccgtacTGCATCCAGTTGGTGGATGCGCCATACCTTGAAACGCCACCGGACGTGGTCGTACTATTCAGACGTAATAGTGCAAGACGCGACGTTAGCGAATTTCTGGTTCCCCCTGAGCGGGGGGATCTCAAAACAATTAGTg < 2:325334/142‑1 (MQ=255) ctgctgtCATTTGCTAGAAGGGGCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTc < 2:100319/137‑1 (MQ=255) cTGCATTCAGTTGCTGGAAGGGCAATACGTTGAAACGGCACCGGAAGTGGTTGCAGGATTCAGACCGAAGAGTGCCAGACGCCACCTTAGAGCATAAAACAAGCCCCCCGGGCGGGGGGGACGGAAAACAATTAGTGGGATTc > 2:1240937/1‑143 (MQ=255) tGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGACTAAAAAAATCCCACCGAGCGGGGGGGTCACAAAGCAATTAGTGGGATTCa > 2:775983/1‑143 (MQ=255) tGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGACACCGAGAGCTCGGGGGGCATTCAGACAGAAGAGAAAAAAACGAGACGTTACCGCATACAAAAATCCCCCCGAGCGGGGGGACTACAAAACAATAACGGGGATTCa > 2:88484/1‑143 (MQ=255) aGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCg > 1:351505/1‑143 (MQ=255) gTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTAACCAATCgg > 2:130610/1‑143 (MQ=255) tGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAGACAATTAGTGGGATTCACCAATAGGCAGaa > 1:134273/1‑143 (MQ=255) tGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGaa > 2:213048/1‑143 (MQ=255) gcgAAGGGCCAGACGGTGAGACGTCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGGAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGaa < 2:930258/141‑1 (MQ=255) aGGGCCATACGTTGAAACGCCCCCGGAAGGTGTGGCAGCATTCAGACCGAAGAGTGCAAGACGCGGCGTTAGCGAATAAAAAGATCCCCCCGAGCGGTGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGt < 2:417318/143‑1 (MQ=255) gCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAACTAGTGGGCTTCCCCAATCGGAAGACAGGTgac > 2:753140/1‑141 (MQ=255) ccATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGa > 1:1002952/1‑143 (MQ=255) ttGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAGTTACCCCCGAGCGGGGGGATCGCAAAACAATTAGTGGGATTCACCGATCGCGCGAACGGGGCGACCacacg > 1:179027/1‑142 (MQ=255) ttGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAACACAACAATCCCACCGAGCGGGGGGGTCTCAAAACAATTAGTGGGATTCACCAAACGGCAGAACGGTGCGACCAAACt > 1:178859/1‑143 (MQ=255) tGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAGAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAGACTg > 1:154710/1‑143 (MQ=255) gaCGGCACAGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCTAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTc < 1:739257/142‑1 (MQ=255) agggCACCGGAAGTGGTTGCAGCATTCAGGCCAGAGAGTGCTTGTCGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCg < 1:1205342/141‑1 (MQ=255) gCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTc < 2:726616/143‑1 (MQ=255) gCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTc < 2:1153008/143‑1 (MQ=255) gcgggggtggtgGCAGGATTCAGACCGAAGAGTTGAAGACGGGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGt < 2:930989/137‑1 (MQ=255) gAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGCCACACCGGTGCGCCCAAACTCCTCGTACAGTACt > 1:755836/1‑143 (MQ=255) gTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCa > 1:727403/1‑143 (MQ=255) gTGGTTGCAACATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCa < 1:246700/143‑1 (MQ=255) tGGTTGCAGGATTCAGACCGCAGAGTGCAAGACGCGACGTTAGCGAATAAACAAAGCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCAc < 2:989858/143‑1 (MQ=255) tGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCAc < 1:1202391/143‑1 (MQ=255) ttGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTGAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAGACTGCCCGGTCACTACTTCACCCa > 2:47522/1‑143 (MQ=255) ttGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGCTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCa > 1:824870/1‑143 (MQ=255) tCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATAAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCagat > 2:171888/1‑143 (MQ=255) acAGACCGAAGATGGCAAGACGCGACGTTAGCGAATAAAAAAACCCCCCCGAGCGGGGGGGTCTCAAGACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCagat < 1:293216/142‑1 (MQ=255) aGACCGAAGAGTGCACGACGCGACGGTAGCGAATAAAAAAAACCCCCCGCGCGGGGGGATGTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGGACTTCCCCCATCGCCacatag > 1:1277163/1‑143 (MQ=255) aCCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCagatagat > 1:703483/1‑143 (MQ=255) gagTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCt < 1:853852/143‑1 (MQ=255) aCGCGCCGCTAGCGAATAAAAAATTCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTCCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCa < 2:1140394/143‑1 (MQ=255) aCGCGACGTTAGCGAATAAAAAAAGCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCa < 2:1132391/143‑1 (MQ=255) gACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATc < 1:408885/143‑1 (MQ=255) ccGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACGAATCGGCCGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCa < 2:945044/142‑1 (MQ=255) gTTAGTGAATAAAAAATTCCCCCCGGGCGCGCGGATCTCAAATCAGTTAGTGGGATTCACCAATCGGCCGAGCGGTGCGACCAAAGTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGc < 2:12005/143‑1 (MQ=255) cggaTAAAAAAAGCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGGGCGCCCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAAt < 1:703727/140‑1 (MQ=255) gAATAAAAAAGTCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATc < 2:650375/143‑1 (MQ=255) gAACAACAAAATCCCCCCGTGCGGGCGGATCTCAAAACAATTAGTGGGATTCACCAACCGGCAGAACGTTGCGACAAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATc < 1:136961/143‑1 (MQ=255) aacagaTCCCCGCGAGCGGGCGGATCCCAAGACAACTAGTGGGATTCAGCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCTCTGGCACCGCAGATCAGCCCAATCCAGcc < 2:608695/138‑1 (MQ=255) gaTCCCCCCGCTCGGGGGGATCTCAAAACCATTAGTGAGATTCACCAATCGGCAGAACGGTGCGACCAAAGTGCTCGTTCAGTACTTCACCCATCGCCAGCTCGATTGCGCTGGCCCCACAGCTCAGGCGACTCCAGCGGGCa > 2:1087228/2‑143 (MQ=255) aaTCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAAATCAGCCGCAACCACCCGGcc > 2:714250/1‑142 (MQ=255) aTCCCCCCGCTCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATCGCGCCGGCACCGCCGATCAGCCCACTCCAGCCgccca > 2:893543/1‑139 (MQ=255) ccccccGCTCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAg > 1:748191/1‑143 (MQ=255) cccccGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCGCCGCAGATCAGCCCAATCCAGCCGGCagagg > 1:504124/1‑142 (MQ=255) ccccGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGTg > 2:346352/1‑143 (MQ=255) cccGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGCACGGTGCGACCAAACTGCTCGCTCAGTACTTCACCCATCGCCAGCTAGCTTGCGCTGGAACCGCAGATCACCCCCCCCCAGCCGCCacccagg > 2:889271/1‑137 (MQ=255) | CACGGTATTTTTGCCAGCGTACCGTACTGCATTCAGTTGCTGGAAGGGCCATACGTTGAAACGGCACCGGAAGTGGTTGCAGCATTCAGACCGAAGAGTGCAAGACGCGACGTTAGCGAATAAAAAAATCCCCCCGAGCGGGGGGATCTCAAAACAATTAGTGGGATTCACCAATCGGCAGAACGGTGCGACCAAACTGCTCGTTCAGTACTTCACCCATCGCCAGATAGATTGCGCTGGCACCGCAGATCAGCCCAATCCAGCCGGCAAAGTGG > NC_000913/9771‑10045 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |