| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,388,285 | A→G | 12.6% | intergenic (+24/+20) | tyrR → / ← tpx | DNA‑binding transcriptional dual regulator TyrR/lipid hydroperoxide peroxidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,388,285 | 0 | A | G | 12.6% | 98.9 / 4.4 | 45 | intergenic (+24/+20) | tyrR/tpx | DNA‑binding transcriptional dual regulator TyrR/lipid hydroperoxide peroxidase |
| Reads supporting (aligned to +/- strand): ref base A (19/20); new base G (4/2); total (23/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.49e-01 | |||||||||||
TATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAGACC > NC_000913/1388148‑1388427 | tATCGCAATGATCCGAGCACGCGCAAATGGGCAAAACGTCTCGGCGTTTCACATAGCGCGATTGGCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCa < 2:239620/143‑1 (MQ=255) gCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAg > 1:262658/1‑143 (MQ=255) cAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGTTGCACCATCAgg > 1:695936/1‑143 (MQ=255) cAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGTTGCACCATCAgg < 2:695936/143‑1 (MQ=255) aaTTAGCCCGGCACGCGCAAACGGGCAAAACGGCTCGGCGGTTCACATACCGCGATTGCCAATGAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGc < 2:59582/143‑1 (MQ=255) aTCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCatat < 2:40052/143‑1 (MQ=255) ccAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTaa > 2:465720/1‑143 (MQ=255) cAGCACGCGCAAACTGGCAAAGCGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTaaa > 1:620136/1‑143 (MQ=255) gcAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCtt > 1:1101775/1‑143 (MQ=255) cagCAAATCGTGTCGGCGTGTTACATACCGCGATTGGCAATAAGGTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTa < 2:1087812/141‑1 (MQ=255) aCGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGACGAAGAACGAAGCGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCag > 1:87255/1‑143 (MQ=255) tcGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAgctg > 2:108254/1‑143 (MQ=255) tcGGCGTTTCACAGACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAgctg < 2:733528/143‑1 (MQ=255) cGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAgctgc < 1:770989/143‑1 (MQ=255) cGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGAGCCAGCTG‑CTTTTGGTGTAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAgctgc > 1:1270711/1‑143 (MQ=255) cGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTc < 1:241591/143‑1 (MQ=255) tttCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACAATCAGGCATAGTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGt > 2:96951/1‑143 (MQ=255) tCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTCCAGCCCGCGCTGCTCCGTaa > 1:1182078/1‑143 (MQ=255) cacaTACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAATGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAAt < 2:854951/143‑1 (MQ=255) cgATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCgg > 2:175919/1‑143 (MQ=255) cgATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGAAGGACCATCAGGCGTATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCgg > 1:475970/1‑143 (MQ=255) ccAATGAGTGGCGGGAGTATGGTCTGATGCGGAGGAAGAACGAAGAGGAAGCGCG‑AATATGCCGGATGGTGCAGCACTATCATGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGGAATCCGGCTCGGTGGTGa < 1:598965/143‑1 (MQ=255) aaTAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGAtt > 2:305612/1‑143 (MQ=255) tatgTTGCGGGAGTGTGGTCTGAGGCGGCGGAGGGGCGACGGGTGGGCGGG‑GCTATGCCTGATGCGGGTACACCATCAGGCATATGAAATTATGCTTTCGGGACATCCACAGCTGCATCGTAATCCGGCTCGGTGGTGATTTc < 2:627280/140‑1 (MQ=255) gCGGGAATATGGTCTGAGGCAGAAGAAGCACGAAGAGTAAGCGCG‑AATATGCCTGGTGGTGCAACACCAGCAGGCATATTAAATGATGCTTTCAGTACAGCTAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATccac < 2:1117879/143‑1 (MQ=255) gggAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCATCGTAATCCGGCTCGGTGGTGATTTCATccacca > 2:318234/1‑143 (MQ=255) tatGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCCCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAgctgg < 1:55747/143‑1 (MQ=255) atGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCTGGTTTATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGCCTCGGTGGTGATTTCATCCACCCgctgcc > 2:19140/1‑141 (MQ=255) cTGAGGCAGAAGCCGAACGAAGAGTGAGCTCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGaaa < 2:1137672/143‑1 (MQ=255) gttagaagaagaCCGAAGTGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAAGTAGGCTGTCAGTACAGCCAGAGCTGCTTCGTAATCCTGCTCGGTGGTGATCTCATCCACCAGCTGGCTGAAAATca < 2:116095/140‑1 (MQ=255) gttgttcGAAGTTTAAGCGCG‑ATTTTGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTc < 1:1098707/137‑1 (MQ=255) gaagaaCGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTc > 1:150421/1‑143 (MQ=255) cGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATCGGCCTTTTc > 2:663680/1‑143 (MQ=255) aaGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGt < 1:465720/143‑1 (MQ=255) agTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCaa < 1:175919/143‑1 (MQ=255) tAAGCGGG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATa < 1:1255573/143‑1 (MQ=255) tAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTCTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATa < 1:45603/143‑1 (MQ=255) tatGCCTGATGGTGTTGCACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACgg > 1:510298/1‑143 (MQ=255) tGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCa < 2:620136/143‑1 (MQ=255) tGCCTGATGGTGCAACACAATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCa < 1:1106616/143‑1 (MQ=255) ccTGATGGTGTTGCACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAATATCACATTGTCATTTTCGTCCATGACCACAACGGCCcg > 1:1025942/1‑143 (MQ=255) ccTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCatg > 1:728480/1‑141 (MQ=255) cTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCCCCTTGTCATTTTCGTCAATAACCACCACGGCAcgc > 1:358337/1‑143 (MQ=255) gCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAg > 1:1121768/1‑143 (MQ=255) gCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAg > 2:751140/1‑143 (MQ=255) acacCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAGAcc > 1:310551/1‑143 (MQ=255) acacCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAGAcc > 1:1225402/1‑143 (MQ=255) | TATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCG‑AATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAGACC > NC_000913/1388148‑1388427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |