Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,704,306 A→T 9.4% intergenic (‑243/+29) rnc ← / ← lepB RNase III/signal peptidase I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,704,3060AT 9.4% 159.3 / 8.9 68intergenic (‑243/+29)rnc/lepBRNase III/signal peptidase I
Reads supporting (aligned to +/- strand):  ref base A (25/34);  new base T (2/4);  total (29/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.82e-01

ATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGG  >  NC_000913/2704165‑2704445
                                                                                                                                             |                                                                                                                                           
atGGGGACCAACGCGGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATaa                                                                                                                                            <  2:418651/143‑1 (MQ=255)
 tGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAAc                                                                                                                                           >  1:261890/1‑143 (MQ=255)
 tGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAAc                                                                                                                                           >  1:261858/1‑143 (MQ=255)
    ggACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGc                                                                                                                                        <  1:440367/143‑1 (MQ=255)
    ggACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGc                                                                                                                                        >  1:947087/1‑143 (MQ=255)
    ggACCAACGCTGTTGCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGc                                                                                                                                        <  2:717072/143‑1 (MQ=255)
         aaCGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACaa                                                                                                                                   >  2:401348/1‑143 (MQ=255)
          aCGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCGTTATGGCGACAAc                                                                                                                                  <  1:431526/143‑1 (MQ=255)
          aCGCTGTTTCGTGTGCCGATGCAACCTGGAGGTGCCCACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCGTTATGGCGACAAc                                                                                                                                  <  2:730252/143‑1 (MQ=255)
          aCGCGGTTGCGTGGGGCGTGGCAACCTGGCGGTGCCAACCTTAAACCTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTGAGCCACGGGTGAGTTATCTCATATATAATGCACGTTGTCGCCGTTATGGCGACAAc                                                                                                                                  <  1:1177200/143‑1 (MQ=255)
           cGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCCTAACTAATTCACGTTGTCGCCATCTCGGCGatatcg                                                                                                                                 >  1:599993/1‑138 (MQ=255)
             cTGTTTCGTGTGCCGTGGCAACCTGGATGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGCGATGCCGTTAGCCACGGGAGATTTATCGCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTg                                                                                                                               <  1:538678/143‑1 (MQ=255)
              tGTTTCGGGTGCCGTGGCAGCCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCGATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCGTTATGGCGACAACGTGa                                                                                                                              <  2:37340/143‑1 (MQ=255)
                tttCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTCTACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGaaa                                                                                                                            >  2:544378/1‑142 (MQ=255)
                tttCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTCTCTCATAAAGAATTCACGTTGTCGCCATAACGGCGACAACGTGAAc                                                                                                                            >  1:1265267/1‑143 (MQ=255)
                       tgCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTAGCAATAAAGGGGTCAACGTGAACGAAGATg                                                                                                                     >  1:1199411/1‑143 (MQ=255)
                        gCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATgg                                                                                                                    >  2:1068691/1‑143 (MQ=255)
                            tGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATCCACAACGACGCGGGATGTCGTTAGCCACGGGAGATTTCTCTCATAAATAGTTCACGTGGTCGCCATGCAAGCCACAAAGTGAACGAagctagctgt                                                                                                                >  2:923002/1‑141 (MQ=255)
                                   cTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGa                                                                                                         <  1:1060301/143‑1 (MQ=255)
                                   cTGGAGGTGCCAACCGTAACCCCCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTCAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGa                                                                                                         <  1:216374/143‑1 (MQ=255)
                                       aGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATgcc                                                                                                     <  1:1129861/143‑1 (MQ=255)
                                          tGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATgccgcc                                                                                                  >  2:741249/1‑143 (MQ=255)
                                            ccAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATACCGCCaa                                                                                                >  1:368080/1‑143 (MQ=255)
                                            ccAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATATCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCaa                                                                                                >  1:733799/1‑143 (MQ=255)
                                            ccAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGAGGGATGTCGTTAGCCACGGGAGATTTATCTCAGAAATAATTCACGTTGTCGCCATAGCGGCGACAACGTGAACGAACATGGCTATTAATGGAAgccgccga                                                                                                >  2:514815/1‑141 (MQ=255)
                                               aCCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGc                                                                                             >  1:419887/1‑143 (MQ=255)
                                               aCCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGc                                                                                             >  1:323973/1‑143 (MQ=255)
                                                 gttAACCTTCGGGGGATTATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGa                                                                                           <  2:250430/142‑1 (MQ=255)
                                                 cTTAAGCTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCCGTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGa                                                                                           <  2:1240969/143‑1 (MQ=255)
                                                      tcTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCGCGTTGTCGCGATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTaa                                                                                      <  1:28961/142‑1 (MQ=255)
                                                       ctgcGGTGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGATATTTATCTCATAAATAAGTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAg                                                                                     <  1:567397/140‑1 (MQ=255)
                                                         tCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAgcg                                                                                   <  2:925263/143‑1 (MQ=255)
                                                              ggAATATTCTATACCCAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGAc                                                                              <  2:927320/143‑1 (MQ=255)
                                                              ggAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGAc                                                                              <  1:351127/143‑1 (MQ=255)
                                                                aaTATTCTATACACAACGACGGGGGATGTCGTAAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCa                                                                            <  1:1158689/143‑1 (MQ=255)
                                                                     tCTATACTCAACGACGGGTGATGGCGTTAGCCACGGGAGGTTTATCGCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCgg                                                                       <  1:175542/143‑1 (MQ=255)
                                                                     tCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTCTCTCATAAATAATTCACGTTGTCGACGTTATGGCGACAACGTGAACGAAGATGGCGATTAACGGATGCCGCCAATGAGACTTAAGCGGCGACAAGTCgg                                                                       >  2:708100/1‑143 (MQ=255)
                                                                          acacAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCAtg                                                                  >  1:802378/1‑142 (MQ=255)
                                                                             caACGACGGGGAATGTCGTTAGCCACGGGAGATTTATCGCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGc                                                               <  2:1281769/143‑1 (MQ=255)
                                                                                 gacgGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCcttc                                                           <  1:278610/143‑1 (MQ=255)
                                                                                  agaggggATGTCGTTAGCCACGGGAGATTTAGCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCcttct                                                          <  2:412543/140‑1 (MQ=255)
                                                                                     ggggAGGTCGTTAGCCAAGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGc                                                       <  1:898638/143‑1 (MQ=255)
                                                                                         agggcGTGAGCCAGGGGAGATAGATCACATAAATAATTCACGCTGCCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTAt                                                   <  1:249497/139‑1 (MQ=255)
                                                                                         aTGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTAt                                                   <  1:340338/143‑1 (MQ=255)
                                                                                           gTCGTGAGCCACGGGATATTGATCTGATAAATACTTCACGTTGTCGCCATAACGGCGACAACGTGAACGCAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCg                                                 <  2:1212935/143‑1 (MQ=255)
                                                                                             cGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGaa                                               <  1:452670/143‑1 (MQ=255)
                                                                                              gTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTCCTTGCTTCTCGCAg                                              >  2:733655/1‑143 (MQ=255)
                                                                                                    cACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCTACAACGTGACCGAAGACGCCTATTAATGGATGCCGCCAATGCGCCTCAAGCGCAGACCAGTCGGCCATTCGCCTACTTCCTTATCGCAGCTCATc                                        >  2:331774/1‑143 (MQ=255)
                                                                                                    cACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGACTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTGCCCTGCCTGCTCATCGAAGCCCATc                                        >  2:796965/1‑143 (MQ=255)
                                                                                                        ggAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATACAGa                                    >  1:1013662/1‑143 (MQ=255)
                                                                                                                 tctcATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTACTGGATGCCGCCCCTGCGACTTAAGCGCAGACCACTCGGCCATTCGCCTTCTTGCCTATCGCAGCTCCTCCAGATAGCCgctc                           >  2:591643/1‑140 (MQ=255)
                                                                                                                   tcATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGcc                         <  2:1203056/143‑1 (MQ=255)
                                                                                                                      taaataaTTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGAAGCCTCCAATCCGACTTAACCGCAGACCAGCCGGCCAGTCGCCTTCTTGCTCCTCGACGCCCCTCCCGATACCCGTTGcccca                      >  1:538709/1‑141 (MQ=255)
                                                                                                                       aaataaTTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCccgac                     <  2:323973/143‑1 (MQ=255)
                                                                                                                          taatTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCccgaccga                  >  2:28788/1‑143 (MQ=255)
                                                                                                                          taatTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCccgaccga                  <  2:1122749/143‑1 (MQ=255)
                                                                                                                              gcACGCTGCCGCCATAACTGCCACAACGGGAACGAAGCTGGCTATTAATGGATGCCGCCAATGCTACTTAATCGCAGACCAGCCGGCCATTCGCCGCCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAg              <  1:477148/142‑1 (MQ=255)
                                                                                                                               cACGTTGTCGCCGTTATGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGAGCAGACCAGTCGGCCAATCGCCTTCTGGCTTATGGAAGCTCGTGCAGAGAGCCGTTGCCCGAACGACCAGa             >  1:758882/1‑143 (MQ=255)
                                                                                                                                 cGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTCTTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAACCTCATCCAGCTAGCCGTTGCCAGACCGCCCAgcct           >  1:215986/1‑140 (MQ=255)
                                                                                                                                 cGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGAtt           <  2:1199411/143‑1 (MQ=255)
                                                                                                                                  gTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGAc                                                                              >  2:1023574/1‑75 (MQ=255)
                                                                                                                                  gTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGAc                                                                              <  1:1023574/75‑1 (MQ=255)
                                                                                                                                  gTTGTCGCAATGACGGAGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTc          <  1:1222574/143‑1 (MQ=255)
                                                                                                                                  gTTGCCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTc          <  1:346492/143‑1 (MQ=255)
                                                                                                                                    tGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGc        >  1:605285/1‑143 (MQ=255)
                                                                                                                                        gCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGCATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTcc    <  2:1106832/143‑1 (MQ=255)
                                                                                                                                          cATAAGGGCGCTAACGTGGACGAAGATGGCTAGTAATGGATGCCGCCAATGCGAGTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCgg  <  2:143949/143‑1 (MQ=255)
                                                                                                                                          cATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCgg  <  2:419887/143‑1 (MQ=255)
                                                                                                                                          cATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCgg  <  1:1004985/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                           
ATGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGG  >  NC_000913/2704165‑2704445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: