Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,704,308 C→T 9.4% intergenic (‑245/+27) rnc ← / ← lepB RNase III/signal peptidase I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,704,3080CT 9.4% 158.0 / 7.2 67intergenic (‑245/+27)rnc/lepBRNase III/signal peptidase I
Reads supporting (aligned to +/- strand):  ref base C (24/34);  new base T (2/4);  total (28/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.28e-01

TGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACA  >  NC_000913/2704166‑2704449
                                                                                                                                              |                                                                                                                                             
tGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAAc                                                                                                                                               >  1:261890/1‑143 (MQ=255)
tGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAAc                                                                                                                                               >  1:261858/1‑143 (MQ=255)
   ggACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGc                                                                                                                                            <  1:440367/143‑1 (MQ=255)
   ggACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGc                                                                                                                                            >  1:947087/1‑143 (MQ=255)
   ggACCAACGCTGTTGCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGc                                                                                                                                            <  2:717072/143‑1 (MQ=255)
        aaCGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACaa                                                                                                                                       >  2:401348/1‑143 (MQ=255)
         aCGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCGTTATGGCGACAAc                                                                                                                                      <  1:431526/143‑1 (MQ=255)
         aCGCTGTTTCGTGTGCCGATGCAACCTGGAGGTGCCCACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCGTTATGGCGACAAc                                                                                                                                      <  2:730252/143‑1 (MQ=255)
         aCGCGGTTGCGTGGGGCGTGGCAACCTGGCGGTGCCAACCTTAAACCTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTGAGCCACGGGTGAGTTATCTCATATATAATGCACGTTGTCGCCGTTATGGCGACAAc                                                                                                                                      <  1:1177200/143‑1 (MQ=255)
          cGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCCTAACTAATTCACGTTGTCGCCATCTCGGCGatatcg                                                                                                                                     >  1:599993/1‑138 (MQ=255)
            cTGTTTCGTGTGCCGTGGCAACCTGGATGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGCGATGCCGTTAGCCACGGGAGATTTATCGCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTg                                                                                                                                   <  1:538678/143‑1 (MQ=255)
             tGTTTCGGGTGCCGTGGCAGCCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCGATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCGTTATGGCGACAACGTGa                                                                                                                                  <  2:37340/143‑1 (MQ=255)
               tttCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTCTACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGaaa                                                                                                                                >  2:544378/1‑142 (MQ=255)
               tttCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTCTCTCATAAAGAATTCACGTTGTCGCCATAACGGCGACAACGTGAAc                                                                                                                                >  1:1265267/1‑143 (MQ=255)
                      tgCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTAGCAATAAAGGGGTCAACGTGAACGAAGATg                                                                                                                         >  1:1199411/1‑143 (MQ=255)
                       gCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATgg                                                                                                                        >  2:1068691/1‑143 (MQ=255)
                           tGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATCCACAACGACGCGGGATGTCGTTAGCCACGGGAGATTTCTCTCATAAATAGTTCACGTGGTCGCCATGCAAGCCACAAAGTGAACGAagctagctgt                                                                                                                    >  2:923002/1‑141 (MQ=255)
                                  cTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGa                                                                                                             <  1:1060301/143‑1 (MQ=255)
                                  cTGGAGGTGCCAACCGTAACCCCCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTCAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGa                                                                                                             <  1:216374/143‑1 (MQ=255)
                                      aGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATgcc                                                                                                         <  1:1129861/143‑1 (MQ=255)
                                         tGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATgccgcc                                                                                                      >  2:741249/1‑143 (MQ=255)
                                           ccAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATACCGCCaa                                                                                                    >  1:368080/1‑143 (MQ=255)
                                           ccAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATATCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCaa                                                                                                    >  1:733799/1‑143 (MQ=255)
                                           ccAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGAGGGATGTCGTTAGCCACGGGAGATTTATCTCAGAAATAATTCACGTTGTCGCCATAGCGGCGACAACGTGAACGAACATGGCTATTAATGGAAgccgccga                                                                                                    >  2:514815/1‑141 (MQ=255)
                                              aCCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGc                                                                                                 >  1:323973/1‑143 (MQ=255)
                                              aCCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGc                                                                                                 >  1:419887/1‑143 (MQ=255)
                                                gttAACCTTCGGGGGATTATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGa                                                                                               <  2:250430/142‑1 (MQ=255)
                                                cTTAAGCTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCCGTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGa                                                                                               <  2:1240969/143‑1 (MQ=255)
                                                     tcTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCGCGTTGTCGCGATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTaa                                                                                          <  1:28961/142‑1 (MQ=255)
                                                      ctgcGGTGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGATATTTATCTCATAAATAAGTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAg                                                                                         <  1:567397/140‑1 (MQ=255)
                                                        tCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAgcg                                                                                       <  2:925263/143‑1 (MQ=255)
                                                             ggAATATTCTATACCCAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGAc                                                                                  <  2:927320/143‑1 (MQ=255)
                                                             ggAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGAc                                                                                  <  1:351127/143‑1 (MQ=255)
                                                               aaTATTCTATACACAACGACGGGGGATGTCGTAAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCa                                                                                <  1:1158689/143‑1 (MQ=255)
                                                                    tCTATACTCAACGACGGGTGATGGCGTTAGCCACGGGAGGTTTATCGCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCgg                                                                           <  1:175542/143‑1 (MQ=255)
                                                                    tCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTCTCTCATAAATAATTCACGTTGTCGACGTTATGGCGACAACGTGAACGAAGATGGCGATTAACGGATGCCGCCAATGAGACTTAAGCGGCGACAAGTCgg                                                                           >  2:708100/1‑143 (MQ=255)
                                                                         acacAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCAtg                                                                      >  1:802378/1‑142 (MQ=255)
                                                                            caACGACGGGGAATGTCGTTAGCCACGGGAGATTTATCGCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGc                                                                   <  2:1281769/143‑1 (MQ=255)
                                                                                gacgGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCcttc                                                               <  1:278610/143‑1 (MQ=255)
                                                                                 agaggggATGTCGTTAGCCACGGGAGATTTAGCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCcttct                                                              <  2:412543/140‑1 (MQ=255)
                                                                                    ggggAGGTCGTTAGCCAAGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGc                                                           <  1:898638/143‑1 (MQ=255)
                                                                                        agggcGTGAGCCAGGGGAGATAGATCACATAAATAATTCACGCTGCCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTAt                                                       <  1:249497/139‑1 (MQ=255)
                                                                                        aTGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTAt                                                       <  1:340338/143‑1 (MQ=255)
                                                                                          gTCGTGAGCCACGGGATATTGATCTGATAAATACTTCACGTTGTCGCCATAACGGCGACAACGTGAACGCAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCg                                                     <  2:1212935/143‑1 (MQ=255)
                                                                                            cGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGaa                                                   <  1:452670/143‑1 (MQ=255)
                                                                                             gTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTCCTTGCTTCTCGCAg                                                  >  2:733655/1‑143 (MQ=255)
                                                                                                   cACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCTACAACGTGACCGAAGACGCCTATTAATGGATGCCGCCAATGCGCCTCAAGCGCAGACCAGTCGGCCATTCGCCTACTTCCTTATCGCAGCTCATc                                            >  2:331774/1‑143 (MQ=255)
                                                                                                   cACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGACTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTGCCCTGCCTGCTCATCGAAGCCCATc                                            >  2:796965/1‑143 (MQ=255)
                                                                                                       ggAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATACAGa                                        >  1:1013662/1‑143 (MQ=255)
                                                                                                                tctcATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTACTGGATGCCGCCCCTGCGACTTAAGCGCAGACCACTCGGCCATTCGCCTTCTTGCCTATCGCAGCTCCTCCAGATAGCCgctc                               >  2:591643/1‑140 (MQ=255)
                                                                                                                  tcATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGcc                             <  2:1203056/143‑1 (MQ=255)
                                                                                                                     taaataaTTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGAAGCCTCCAATCCGACTTAACCGCAGACCAGCCGGCCAGTCGCCTTCTTGCTCCTCGACGCCCCTCCCGATACCCGTTGcccca                          >  1:538709/1‑141 (MQ=255)
                                                                                                                      aaataaTTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCccgac                         <  2:323973/143‑1 (MQ=255)
                                                                                                                         taatTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCccgaccga                      >  2:28788/1‑143 (MQ=255)
                                                                                                                         taatTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCccgaccga                      <  2:1122749/143‑1 (MQ=255)
                                                                                                                             gcACGCTGCCGCCATAACTGCCACAACGGGAACGAAGCTGGCTATTAATGGATGCCGCCAATGCTACTTAATCGCAGACCAGCCGGCCATTCGCCGCCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAg                  <  1:477148/142‑1 (MQ=255)
                                                                                                                              cACGTTGTCGCCGTTATGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGAGCAGACCAGTCGGCCAATCGCCTTCTGGCTTATGGAAGCTCGTGCAGAGAGCCGTTGCCCGAACGACCAGa                 >  1:758882/1‑143 (MQ=255)
                                                                                                                                cGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTCTTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAACCTCATCCAGCTAGCCGTTGCCAGACCGCCCAgcct               >  1:215986/1‑140 (MQ=255)
                                                                                                                                cGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGAtt               <  2:1199411/143‑1 (MQ=255)
                                                                                                                                 gTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGAc                                                                                  >  2:1023574/1‑75 (MQ=255)
                                                                                                                                 gTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGAc                                                                                  <  1:1023574/75‑1 (MQ=255)
                                                                                                                                 gTTGTCGCAATGACGGAGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTc              <  1:1222574/143‑1 (MQ=255)
                                                                                                                                 gTTGCCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTc              <  1:346492/143‑1 (MQ=255)
                                                                                                                                   tGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGc            >  1:605285/1‑143 (MQ=255)
                                                                                                                                       gCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGCATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTcc        <  2:1106832/143‑1 (MQ=255)
                                                                                                                                         cATAAGGGCGCTAACGTGGACGAAGATGGCTAGTAATGGATGCCGCCAATGCGAGTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCgg      <  2:143949/143‑1 (MQ=255)
                                                                                                                                         cATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCgg      <  2:419887/143‑1 (MQ=255)
                                                                                                                                         cATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCgg      <  1:1004985/143‑1 (MQ=255)
                                                                                                                                             aCGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGcaca  >  1:900294/1‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                             
TGGGGACCAACGCTGTTTCGTGTGCCGTGGCAACCTGGAGGTGCCAACCTTAAACTTCGGGGGAATATTCTATACACAACGACGGGGGATGTCGTTAGCCACGGGAGATTTATCTCATAAATAATTCACGTTGTCGCCATAACGGCGACAACGTGAACGAAGATGGCTATTAATGGATGCCGCCAATGCGACTTAAGCGCAGACCAGTCGGCCATTCGCCTTCTTGCTTATCGAAGCTCATCCAGATAGCCGTTGCCCGACCGACCAGATTCGCTTCCGGCACA  >  NC_000913/2704166‑2704449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: