| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,938,255 | T→A | 5.3% | L10Q (CTG→CAG) | rbsR → | DNA‑binding transcriptional dual regulator RbsR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,938,255 | 0 | T | A | 5.3% | 422.7 / 8.7 | 151 | L10Q (CTG→CAG) | rbsR | DNA‑binding transcriptional dual regulator RbsR |
| Reads supporting (aligned to +/- strand): ref base T (77/61); new base A (4/4); total (85/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.55e-01 | |||||||||||
Only 100 of 151 total aligned reads displayed.
TTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAA > NC_000913/3938117‑3938396 | atcaacatGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCCCAACCTTCCGTACCGTCGCGTGAAGAGCTCAACGCATCCGTGGACAGGCCGAGCGGACGCTCGGCTACAATCCAAGATGTGACCCGCCGggcg > 2:379515/8‑143 (MQ=255) tcgtcgtGCCCCTGCGGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTGCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTggcgg < 1:724774/137‑1 (MQ=255) tCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTggcgg < 2:386257/143‑1 (MQ=255) ttttGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGGAAGATGTTGCCCGCCTggcgggcg > 1:1149119/1‑143 (MQ=255) ttttGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCACTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTggcgggcg > 2:412500/1‑143 (MQ=255) ttttGACCATGCTGCCGCTGCGATTGTCGTAACAAGTAAAGGCGAACAACCTTCCGTACCGGGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTggcgggcg < 1:384437/143‑1 (MQ=255) cccATGCTGCCGCTGCGGTCGCCGTAACAGGTAAAGGCGCAGTCCCTTCCCTACCGTGGCGTGAAGAGATCGACGCATTTGTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCt < 2:141729/143‑1 (MQ=255) cccATGCTGCCGCTGCGATTGCCGCACCACGTACTGCCGCTCAACCTTCCGTACCGTGGCGTGACGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACGATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCt > 2:575794/1‑143 (MQ=255) ccATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGACAGATGTTGCCCGCCTGGCGGGCGTTTCTa > 2:7183/1‑143 (MQ=255) ccATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATCAAAGATGTTGCCCGCCTGGCCGGCGTCTCTa > 2:150508/1‑143 (MQ=255) ggtgccgcCGCTGCGGTTGCCGTAACACGTAACGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTAc < 1:714421/141‑1 (MQ=255) cATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGCTGTTGCCCGCCTGGCGGGCGTTTCTAc > 2:1054107/1‑143 (MQ=255) cATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTAc < 1:324756/143‑1 (MQ=255) aTGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGCAGAGAACGACGCCTTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGCTGTTGCCCGCCTGGCGGGCGATTCTAcc > 2:1047928/1‑143 (MQ=255) aTGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGACGAGATCGACGCATTTTTAGACAGGCCGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCCGGCGGGCGTTTCTccc > 1:564326/1‑143 (MQ=255) gcCGCTGCGATTGCCGTAACAAGTAAAGGCGCACAACCTTCCGTACCGTGGCGAGAAGAGATCGCCGCATGTTTAGCCAGGCATGGGTGACGCTTGGCTACAATGAAAGATGTTGCGCGCATTGACTGCGTTCCTGCCTCacc > 2:466127/1‑141 (MQ=255) gcCGCTGCGATTGCCGAAACACGTAAAGGCGCACAACCTTCCGTACCGTTGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAAc < 1:81322/143‑1 (MQ=255) cccgtGCGGTTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGTCGGGCGTTTCTACCTCAACa < 2:25466/139‑1 (MQ=255) ggCGATGGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGGGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGttt < 1:196151/142‑1 (MQ=255) cGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACACGCAGAGGCGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGCGCGTTTCTCCCTCACCAGTTtct > 2:292337/1‑143 (MQ=255) aTTGCCGTAACACGTAAAGGCGCCCACCCTTCCGTACTGTTGGTTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCa > 1:1218699/1‑143 (MQ=255) aTTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCCGCGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGGTGCTACCTAAACAGTTTCCCa > 2:168044/1‑143 (MQ=255) ccGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACgct > 2:775471/1‑141 (MQ=255) gTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGATGGATGTTGCCCGCATGGCGGGCGTTTCTACCTCAACAGTATcacaagataa > 1:314379/1‑137 (MQ=255) gTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTAt < 1:1185081/143‑1 (MQ=255) tAACACGTAAATGCTCACAACCTTCCTTACCGTTGCGTTAAGAGATCTACGCATTTTTAGACAGGCATAGGTGACGCTTGTCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATc < 2:820308/143‑1 (MQ=255) acGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTATTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGAAGTTGCCCGCCTGCCGCGCCTTTCTACCTCAACAGTTTCTCAGCTTATCAAtc > 2:37092/1‑142 (MQ=255) cGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGGGGTTCTACCTGAACGGTTTATACCGTTCTCAGTaa > 2:821667/1‑143 (MQ=255) gTAAAGGCGCACAACGTGCCGTACCGTGGAGTGAAGAGGGCGACGCATTTGGAGACAGGCAGAGGTGACGCTGGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATaaa < 1:36775/143‑1 (MQ=255) gTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATaaa < 2:370745/143‑1 (MQ=255) gTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTCAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATaaa < 1:649562/143‑1 (MQ=255) aGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATc < 1:1190273/143‑1 (MQ=255) ggCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTAAAAAGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCg > 1:653557/1‑143 (MQ=255) gcgcACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTGAACAGGTTCTCACGTTATCAATAAAGATCGc > 1:756786/1‑143 (MQ=255) cgcACAATCTTTCGTGCCGTGGCGTGATGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCt < 2:190863/143‑1 (MQ=255) gcACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGATTCTCACGCTATCAATAAAGATCACtc > 2:922365/1‑142 (MQ=255) gcACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAAACAGGCAGAGGTGACCCGACGCCACAATGACAAATGTTGCGCGCACGGCGGGCGATTCAAACTCAACAGTTTCTCACGTTAACAATAAAGATCGcaa > 2:511932/1‑141 (MQ=255) cacaACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTc > 1:520110/1‑143 (MQ=255) caACCTTCCGTACCGTGGCGTGAAGAGATCGACGCAGTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGt < 2:1202551/143‑1 (MQ=255) aCCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTCGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCa < 2:903059/143‑1 (MQ=255) ccTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGCTCGCTTCGTCAg > 2:27167/1‑143 (MQ=255) cTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGt < 2:396071/143‑1 (MQ=255) tCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGGCGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCACTAACGATCGCTTCGTCCGTGa > 2:470765/1‑143 (MQ=255) tCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGCTCGCTTCGTCCGTGa > 1:277607/1‑143 (MQ=255) ccGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGac > 1:386998/1‑142 (MQ=255) gTACCGTGGCGTGAAGAGATCGACGCCTTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATAAAAGATATTGCACGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGc > 1:1130259/1‑143 (MQ=255) gTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGAAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGGTTCTCACGTTATCGAGAAAGATCGCGTCGTCAGTGAAGc > 2:701376/1‑143 (MQ=255) ccGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGAt < 1:32951/143‑1 (MQ=255) ccGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGAt < 1:269006/143‑1 (MQ=255) ggggCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTa < 2:897869/141‑1 (MQ=255) gTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGAGATTa > 2:9017/1‑143 (MQ=255) tGGCGTGAAGAGGTCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCGCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTAc < 2:136977/143‑1 (MQ=255) tGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTAc > 1:839604/1‑143 (MQ=255) ggCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTAcc < 1:1073438/143‑1 (MQ=255) cGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCACGCGTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGGTGGCTTCGTCAGGGAGGCGGttgtcgc > 2:1278250/1‑138 (MQ=255) tGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCGACAATGAAAGATGTTGCCGGCCGGGCGGGCGTTTCTACCTCAACAGTTTCAGAAGCTATCAATAAAGATTTCTTCGCCAGTTAAGCCGTTACCGCCa > 2:178333/1‑143 (MQ=255) aaGAGATGGACGCATGTTTGGACAGGCAGAGGTGACGCGTGGCTACAATGAAAGATGTGGCCCGCCTGGCGGGCGTTCCCCGCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCaaa < 2:842721/143‑1 (MQ=255) aaGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGACAGTGAAGCGATTACCGCCcaa > 2:373521/1‑143 (MQ=255) agagATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAg < 1:1025343/143‑1 (MQ=255) gagaTCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGt > 2:74382/1‑143 (MQ=255) aTCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTgt > 1:1013273/1‑142 (MQ=255) aTCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGa > 1:171799/1‑143 (MQ=255) aTCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGa > 1:85138/1‑143 (MQ=255) tCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGaa > 1:624602/1‑143 (MQ=255) aCGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACCATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCCAAGTTGAAgcg > 2:1106937/1‑143 (MQ=255) cATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAgcggcg > 2:100494/1‑143 (MQ=255) cATTTTGAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAgcggcg < 1:229346/143‑1 (MQ=255) aTTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTAAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTAGAAGCGGCGa > 2:404320/1‑143 (MQ=255) aTTGTTCGACAGGCAGAGGTGACGCTTCGCTACAATGAAAGATGGTGCCCGACAGGCGGACGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCATCAGTGAAGCGATTACCGCCAGAGTTGAAGCGGCGa < 2:627071/143‑1 (MQ=255) tttttAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGAt > 1:1056774/1‑143 (MQ=255) cattaaGAAAGGCAGACCTGCCGCTCTGCTACAATCAAAGACGATGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGAt < 1:676015/138‑1 (MQ=255) ttttAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGAtt > 1:962814/1‑143 (MQ=255) tttAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTa > 1:1125926/1‑143 (MQ=255) aGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAg > 1:875008/1‑143 (MQ=255) aGGCAGGGGTGGCGTTTAGCTCCGCTGAAACATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACt < 2:1233549/143‑1 (MQ=255) gCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCa > 1:73089/1‑143 (MQ=255) gCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCa > 2:852400/1‑143 (MQ=255) cAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCaa < 1:636971/143‑1 (MQ=255) gagGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAAtt < 1:145641/143‑1 (MQ=255) aCGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTACAGAACTCAATTACgcgc > 1:1184760/1‑143 (MQ=255) gCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTACAGAACTCAATTACGCGCCa > 2:812060/1‑143 (MQ=255) gCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCa > 1:954689/1‑143 (MQ=255) tGGCTACAAGGAAAGATGTTGCCCGCCTGGCTGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCa < 2:719256/143‑1 (MQ=255) gCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGc < 1:377786/143‑1 (MQ=255) cTACAATGAGAGATGTTGCCCGCCTGGCGGGCGTTTCGACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGct < 1:944267/143‑1 (MQ=255) tACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGctc > 1:409171/1‑143 (MQ=255) aaTGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCAAAAGTTAAAGCGGCGATTAAAGATCTCAATTACGCGCCATCAGCTCTgg > 2:892484/1‑143 (MQ=255) aTGAGAGATGTTGCCCGTCTGGCGGTCGTTTCTACCTCAACAGCTTCTCACGTTATCAATAAAGATCGCTTCGGCAGCGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGgc < 2:71071/143‑1 (MQ=255) tGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCCAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGgcg > 1:587842/1‑143 (MQ=255) aaaGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGACATCAGCCCTGGcgcg > 2:736778/1‑143 (MQ=255) aacgCCCGCCAGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCGTCAGCCCTGGCGCGTAGCCt > 1:547384/4‑143 (MQ=255) aaagCCCGCAAGGCGGGCGTTTCTACCTCAACAGTCTCTCACGCTATCAATACAGATCGCTTCGTCAGCGAAGCGATTACCGCCAAAGCTGACGCGCCCACCAAAGACCTCACTCCCGCCCCACCAGCTCTCGCGCGCCGCCt > 2:1226604/4‑143 (MQ=255) ttGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTc < 1:746936/143‑1 (MQ=255) acgCCCGCCAGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTc > 1:339542/3‑143 (MQ=255) acgCCCGCCAGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTc > 2:526823/3‑143 (MQ=255) gCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCaa < 1:923107/143‑1 (MQ=255) gCCCGCCTGGCGGGCGTTTCTAACTACATAGCGTTTATGGCTCTCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGCTTAAAGAACTCAACTACGCGCCATCAGCTCTGGCGCGTAGCCTCaa > 2:394901/1‑143 (MQ=255) ccGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAAc > 2:442001/1‑143 (MQ=255) ccGCCTGGCGGCCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAAc < 1:414196/143‑1 (MQ=255) cTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGCAGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACtcaa < 1:1212372/143‑1 (MQ=255) | TTCGTTTTGCCCATGCTGCCGCTGCGATTGCCGTAACACGTAAAGGCGCACAACCTTCCGTACCGTGGCGTGAAGAGATCGACGCATTTTTAGACAGGCAGAGGTGACGCTTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTTCGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAA > NC_000913/3938117‑3938396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |