Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,002,402 G→A 5.7% intergenic (+26/+17) corA → / ← yigF Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,002,4020GA 5.7% 446.1 / 8.1 162intergenic (+26/+17)corA/yigFNi(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF
Reads supporting (aligned to +/- strand):  ref base G (64/86);  new base A (7/3);  total (72/90)
Fisher's exact test for biased strand distribution p-value = 1.10e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 170 total aligned reads displayed.

TTTGAGTTTATGCCAGAACTGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTAGTGCACCAACAAATAG  >  NC_000913/4002263‑4002544
                                                                                                                                           |                                                                                                                                              
 ttGAGTTTATGCCAGAACTGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTaa                                                                                                                                            <  2:89767/143‑1 (MQ=255)
 ttGAGTGTATGTGAGAACTGGAGTGGAGCTGCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTaa                                                                                                                                            <  1:1105472/143‑1 (MQ=255)
  ggAGTTTGGGCCAGATCTGAAGTGGAGCTTCGCCTACCCGGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGCCAGACTAAg                                                                                                                                           <  2:38319/142‑1 (MQ=255)
   gAGGTTATGCCACAACTGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGc                                                                                                                                          <  1:1100069/143‑1 (MQ=255)
     gTTTATGCCAGAACTGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCa                                                                                                                                        >  1:1197497/1‑143 (MQ=255)
     gTTTATGCCAGAACTGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACAGGTTGATAGAGTCGAGAGCGGTGGCTTAGTCTGGCTAAGCCa                                                                                                                                        >  1:867411/1‑143 (MQ=255)
     gTTTATGCCAGAACTGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGACCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACCGGTTGTAAAAAACGAGAGAGGTGGCTTAGCCAGACTAAGCCa                                                                                                                                        <  2:297077/143‑1 (MQ=255)
      tttATGCCAGAACTGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCAc                                                                                                                                       >  2:122481/1‑143 (MQ=255)
      tttATGCCAGAACTGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCAc                                                                                                                                       >  1:120068/1‑143 (MQ=255)
       ttATGCCAGAACTGAAGTGGAGCTTCGGCTACCCTGGTGCGATTATCTTTATGATCCTCGCGTGCCTGGCACCGTATCTGTACTTTAAGCGGACGAACTGGTTGTAAAAAACGATAGCGGTGTCTTAGTCTGGCTAAGCCAcc                                                                                                                                      <  2:275353/143‑1 (MQ=255)
           gCCAGAACTGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCAACTGtt                                                                                                                                  >  1:404558/1‑143 (MQ=255)
            ccAGAACTGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTa                                                                                                                                 <  1:565694/143‑1 (MQ=255)
             cAGAACTGAAGTGGAGCTTCGGCTACCCTGGCGCTATTATCTTTATCATCCTCGCGGGCCTGGCACCGTATCTGTACTGTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTAt                                                                                                                                <  1:354151/143‑1 (MQ=255)
               gAACCGAGGCGGAGCTTCGGTCCCCCAGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTc                                                                                                                              <  1:1048183/143‑1 (MQ=255)
                  gtGAAGTGGTGCTTCGGCTACCCTTGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCaaa                                                                                                                           <  2:988935/142‑1 (MQ=255)
                  cggAAGTGGAGCTTCGGCTACCCTGGAGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTAATTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCaaa                                                                                                                           <  1:78470/141‑1 (MQ=255)
                   tGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTGTTCACAg                                                                                                                          >  1:162093/1‑143 (MQ=255)
                     aaGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGc                                                                                                                        >  1:1021390/1‑143 (MQ=255)
                        tGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTcc                                                                                                                     >  1:820956/1‑143 (MQ=255)
                          gAGCTTCGGCTACCCTGGCGCGATGATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAg                                                                                                                   <  1:636600/143‑1 (MQ=255)
                          gAGCCTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCCAAGCCACCTGTTATTCAAAGGCTCCAg                                                                                                                   >  1:796579/1‑143 (MQ=255)
                            gCTTCGGGTACCCTGGCGCGATTATTTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGt                                                                                                                 <  1:154162/143‑1 (MQ=255)
                                cGGCTAGCCTGGCGCGATTATCTTTATGATCCACGCGGGTCTGGGACCGTATCGGTACTGTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTAttt                                                                                                             <  2:614755/143‑1 (MQ=255)
                                        gtGGCGCGATTATCTTTATCATCCTCGTTACCCTGTCCCCTTATGTGTACGTTACGCGGAAAAACTGATTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCttt                                                                                                     <  2:408122/142‑1 (MQ=255)
                                        cTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCttt                                                                                                     >  1:1216967/1‑143 (MQ=255)
                                        cTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCtct                                                                                                     >  2:197220/1‑141 (MQ=255)
                                         tGGCGGGATTATCTTTATGAGCTTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCtttt                                                                                                    <  2:1080088/143‑1 (MQ=255)
                                         tGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCtttt                                                                                                    <  2:120068/143‑1 (MQ=255)
                                           gcgcCATTATCTCTATGATCCTCGCGGGCCTGGCACCGGATCGGTACTTTACGCGGAAGAACTGGTTGCAAACAACGAGAGCGGTGGCTTAGTCTGGCTGCGCCTCCTGTTATTCAAAGGCTCCAGGACTTTAGCCCttttcc                                                                                                  <  2:162440/143‑3 (MQ=255)
                                              cgATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACctc                                                                                               >  1:728539/1‑143 (MQ=255)
                                                 ttATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCttt                                                                                            >  2:1124064/1‑143 (MQ=255)
                                                 ttATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCttt                                                                                            >  1:987286/1‑143 (MQ=255)
                                                  gctggttAGGAGCCTGGCGGGCCGGGGACCGTATCTGGGCGGTAGGCGGAAGAACTGGTTGTAAAACGCGAGAGCGGTGGCGTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTtc                                                                                           <  2:580251/138‑1 (MQ=255)
                                                      tttATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCAGTAGCTTAGGCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCAt                                                                                       >  2:1039240/1‑143 (MQ=255)
                                                      tttATGATCCTCGCGCGCCTGGTACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCAt                                                                                       >  2:640315/1‑143 (MQ=255)
                                                      gttATGATCCTCGCGGGCCTGGCACCGTATCTGTACTGTAAGCGGAAGAACTGGTTGTAAAAGACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCAt                                                                                       <  2:73709/142‑1 (MQ=255)
                                                       ttATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATa                                                                                      <  1:688064/143‑1 (MQ=255)
                                                            aTCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAGCGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAAcc                                                                                 >  1:321503/1‑143 (MQ=255)
                                                             tCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCa                                                                                >  1:1019788/1‑143 (MQ=255)
                                                             tCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTAGTTAACCCTTTTACCTCTTTCTCATAGAACCa                                                                                >  2:46475/1‑143 (MQ=255)
                                                              ccTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCAt                                                                               >  1:11126/1‑143 (MQ=255)
                                                               cTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCAtt                                                                              <  1:974657/143‑1 (MQ=255)
                                                               cTCGCGCGCCTGGCACCGTATCTGTACTTTCAGCTGAAGAACTGGTTGTAACAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCAtt                                                                              <  2:361507/143‑1 (MQ=255)
                                                                tCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCAttt                                                                             >  1:359625/1‑143 (MQ=255)
                                                                gcgcgGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGGACTGGTAGCAAGGAACTAGGTCGGTGGCTCATGCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAAGCCTTTTACCTCTTGCTCATAGAACCAttt                                                                             <  2:269012/142‑1 (MQ=255)
                                                                  gcgGGCCTGGCACCGTATCTGGACTGTACGCGGAATAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGt                                                                           <  2:1091883/143‑1 (MQ=255)
                                                                    gggCCTGGGACGGTAGCTGTACTTTGGGGGGAAGCACTGGTTTTAAGTATCGAGAGCGGTGGCTTAGTCTGGCTAAGCCACGTGTTATTCAAAGGCGCCAGGTATTTAACCCGTTTACCTCTTTCTCATAGAACCATTTGTTc                                                                         <  2:959233/143‑1 (MQ=255)
                                                                      gCCTGGTACCGTATCTGTACTGTAGGCGGAAGAGCTGGTTGTACAAAACGCGAGCGGTGGCTTAGTCTGGCTACGCCACCTGTTATTCAAAGGCTCCAGGTATGTAACCCTTTTACCTCTTTCTCATAGACCCATTTGTTCgt                                                                       <  2:520002/143‑1 (MQ=255)
                                                                        cTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCgtgt                                                                     >  1:1075639/1‑143 (MQ=255)
                                                                          ggCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTa                                                                   >  1:1048604/1‑143 (MQ=255)
                                                                           gCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTaa                                                                  <  1:889533/143‑1 (MQ=255)
                                                                           gCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTaa                                                                  >  1:1031877/1‑143 (MQ=255)
                                                                           ccACCGTATCTGTACTTTAAGCGGAACAACTGGTTGTAACAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTaa                                                                  <  2:41123/142‑1 (MQ=255)
                                                                             aCCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTCTTCGTGTTACCa                                                                >  1:921785/1‑143 (MQ=255)
                                                                              ccGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCACAGGCTCCAGGTATTTAACCCTTTTACGTCTTTCTCATAGAACCCCTTGTTCGCGCTAACAg                                                               >  2:431390/1‑143 (MQ=255)
                                                                                  atttGTACTTTTAGCGGAAGAACTGGTTGTAAAAATCGAGATCGGTGGCTTAGTCTGGCTAAGCCATCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATTGAACCATTTGTTCGTGTTAACAGCAAc                                                           <  2:713582/140‑1 (MQ=255)
                                                                                  aTCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAAc                                                           <  2:955956/143‑1 (MQ=255)
                                                                                    cTGTAATTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTAACTCTTTATCATAGAACCATTTGTTCGTGTTAACAGCAACAt                                                         <  2:468210/143‑1 (MQ=255)
                                                                                     tGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATa                                                        >  1:961722/1‑143 (MQ=255)
                                                                                       tACTTTATGCTGATGAGCTGGTTGTAAAGTTCGACAGCTGTGGCTTAGTCTTGCTAAGCCACGTGGTATTTCCAGGTCCCAGATATTTAACTCTTTTTCCTGTGTCTCATTGAACCATTTGTTCGTGTTAACAGCAACATAgg                                                      <  2:211796/143‑1 (MQ=255)
                                                                                        aCTTGAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGgc                                                     <  1:127438/143‑1 (MQ=255)
                                                                                          tttAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGgctg                                                   <  2:175099/143‑1 (MQ=255)
                                                                                                cGGAAGCACTCATCGTAAAAAACGAGAGCGGTGGCTTAGTCTTGCTCCGCCACCTGTTATTCAAAGTCTCCACGTATTTAACCCTTTTACCTCTTTCTCGTAGACCCAATTGTTCGTGTTAACAGCAACATAGGCTGCTACgg                                             <  2:525246/143‑1 (MQ=255)
                                                                                                    agaaCTGGTTGTCAACAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAAt                                         <  1:11605/143‑1 (MQ=255)
                                                                                                     gaaCTGGTGGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAAtt                                        <  1:599051/143‑1 (MQ=255)
                                                                                                       aCTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTcg                                      >  2:803273/1‑142 (MQ=255)
                                                                                                         tGGTTGTAAGAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCa                                    <  2:977433/143‑1 (MQ=255)
                                                                                                         tGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCa                                    <  1:90784/143‑1 (MQ=255)
                                                                                                          ggTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACGTCTCTGGCCAATAACCGTTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAg                                   >  1:932153/1‑143 (MQ=255)
                                                                                                           gtggTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCGCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGa                                  <  1:197277/140‑1 (MQ=255)
                                                                                                           gTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGa                                  >  1:521009/1‑143 (MQ=255)
                                                                                                            ttGTAAAAAACGAGAGCGGTGGCTTAGTCCGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGaa                                 <  1:231335/143‑1 (MQ=255)
                                                                                                             tGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAAt                                <  1:50792/143‑1 (MQ=255)
                                                                                                               tAAAAAACGAGTGCGGTCGCTTAGTCTGGCTAAGCCACCTGTTACTCAAACGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGACTGt                              <  1:882350/143‑1 (MQ=255)
                                                                                                                  aaaaCGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAAGTCACAGCATGTTaa                           >  2:475669/1‑143 (MQ=255)
                                                                                                                   aatcGAGTGCGGTGGCTTAGTCTGGCTAAGCCACCTCTTATTCAAAGGCTCCAGGTAGTTAATCTTCGCAGCGCGGTCTCAGAGAGCCATTTGTTCGTGTTAACAGCAACATAGGTTGCTAAGGCAATTCCCAGAATGTTAAc                          <  2:384746/140‑1 (MQ=255)
                                                                                                                   aaaCGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAAc                          <  1:768845/143‑1 (MQ=255)
                                                                                                                    aaCGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACg                         >  2:859859/1‑143 (MQ=255)
                                                                                                                     aCGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGc                        <  2:867411/143‑1 (MQ=255)
                                                                                                                      cGAGCGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAATGGCTCCAGGTATTTAACCCTTTTACCTCTTCCTCATAGAACCATTTGTTCGTGTTAACATCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGcc                       <  2:704597/143‑1 (MQ=255)
                                                                                                                        agagCCGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCaa                     <  2:514260/143‑1 (MQ=255)
                                                                                                                         gagCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATCGACCCATTTGTTCGTGTTAACAGCAACCTACGCTGCTACGGCAATTCCCAGACTGTTCACACCaac                    >  2:690867/1‑142 (MQ=255)
                                                                                                                         aacaggTGGCTTAGCCAGACTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAAt                    >  2:239601/5‑143 (MQ=255)
                                                                                                                          agCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAAtt                   >  2:398994/1‑143 (MQ=255)
                                                                                                                          agCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAAtt                   >  1:475861/1‑143 (MQ=255)
                                                                                                                           gCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTa                  <  1:1189531/143‑1 (MQ=255)
                                                                                                                           gCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTa                  <  1:216918/143‑1 (MQ=255)
                                                                                                                           caggTGGCTTAGCCAGACTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTa                  <  1:1161060/141‑1 (MQ=255)
                                                                                                                            cGGTGGCTTAGTCTGGCTACGCCTCCTGTTATTCAAGGGCTCCAGGGATTTAACCCTTTTACCTCTTTCTCAGCGAGCCGGTTGTGCGTGTTAACAGCAACAGAGGCTGCTACGGCTATTCCCAGAATGTTAACGCCAATTAg                 <  2:150733/143‑1 (MQ=255)
                                                                                                                            aggTGGCTTAGCCAGACTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTAg                 >  1:293623/2‑143 (MQ=255)
                                                                                                                              gTGGCTTAGTCTGGCGAAGCCGCCTGTTATTCAACGGCTCCAGGTATGTAACCCGTGTACCTCTCTCTCATAGAACCATGTGTTCGTGTTCACAGCAACGTAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTAGTg               <  2:874423/143‑1 (MQ=255)
                                                                                                                              gTGGCTTAGCCAGACTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACGCTTTTACCTCTTTCTATTAGAAGCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGGAGTTGCGAGAATGTTAGCGTCACTTAGTg               >  2:1039346/1‑143 (MQ=255)
                                                                                                                              gTGGCTTAGCCAGACTAAGCCACCTGTTATTCAAAGGCGCCAGGTATTTGACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCGAGTAGTg               >  1:438683/1‑143 (MQ=255)
                                                                                                                              gTGCCTTAGTCCGTCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTAGTg               <  1:307654/143‑1 (MQ=255)
                                                                                                                                ggCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTAGTGCa             <  2:797324/143‑1 (MQ=255)
                                                                                                                                    tAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCGGAATGTTAACGCCAATTAGTGCACcaa         <  1:694227/143‑1 (MQ=255)
                                                                                                                                          ggCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTCCCTCTTTCTCATAGAACCGTTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTAGTGCACCAACAAATa   <  1:175517/143‑1 (MQ=255)
                                                                                                                                          ggCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTAGTGCACCAACAAATa   >  1:907895/1‑143 (MQ=255)
                                                                                                                                           gCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTAGTGCACCAACAAATag  <  2:755528/143‑1 (MQ=255)
                                                                                                                                           gCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTAGTGCACCAACAAATag  >  1:1127979/1‑143 (MQ=255)
                                                                                                                                           |                                                                                                                                              
TTTGAGTTTATGCCAGAACTGAAGTGGAGCTTCGGCTACCCTGGCGCGATTATCTTTATGATCCTCGCGGGCCTGGCACCGTATCTGTACTTTAAGCGGAAGAACTGGTTGTAAAAAACGAGAGCGGTGGCTTAGTCTGGCTAAGCCACCTGTTATTCAAAGGCTCCAGGTATTTAACCCTTTTACCTCTTTCTCATAGAACCATTTGTTCGTGTTAACAGCAACATAGGCTGCTACGGCAATTCCCAGAATGTTAACGCCAATTAGTGCACCAACAAATAG  >  NC_000913/4002263‑4002544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: