Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,049,986 G→T 5.4% noncoding (88/109 nt) spf → small regulatory RNA Spot 42

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,049,9860GT 5.4% 353.0 / 7.4 120noncoding (88/109 nt)spfsmall regulatory RNA Spot 42
Reads supporting (aligned to +/- strand):  ref base G (60/53);  new base T (2/5);  total (62/58)
Fisher's exact test for biased strand distribution p-value = 2.61e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.32e-01

Only 100 of 130 total aligned reads displayed.

AAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAA  >  NC_000913/4049844‑4050127
                                                                                                                                              |                                                                                                                                              
aaaaaaTTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGCATATTCTAGCCGCCCcagtcag                                                                                                                                                >  2:362864/1‑143 (MQ=255)
 aaaaaTTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCcagtcagt                                                                                                                                               <  2:488830/143‑1 (MQ=255)
   aaaTTACAAAAAGTGCTTTCGGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTaa                                                                                                                                             <  1:260775/143‑1 (MQ=255)
         cAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTg                                                                                                                                       <  1:616943/143‑1 (MQ=255)
         cAAAAAGTGCTGTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTg                                                                                                                                       <  1:1042576/143‑1 (MQ=255)
          aaaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCATTACTGACTgg                                                                                                                                      <  1:920488/143‑1 (MQ=255)
          aaaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTgg                                                                                                                                      >  1:1116611/1‑143 (MQ=255)
          aaaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTgg                                                                                                                                      >  1:548838/1‑143 (MQ=255)
           ccgaGTGCTTTCTGAACTGAACAAAAAAGGGGAAAGTTAGCCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCATTACTGACTggg                                                                                                                                     <  2:234217/140‑1 (MQ=255)
                 gcgtgcggaactgaacAAAAAAGAGTAAAGTCAGTCGCGGAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGttt                                                                                                                               <  1:508430/136‑1 (MQ=255)
                   tttCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATAGTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGgtttt                                                                                                                             >  2:1091579/1‑143 (MQ=255)
                   tttCGGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGttttt                                                                                                                             <  2:235841/143‑1 (MQ=255)
                   gtgctgaactgaaCAAAAAAGAGTGATGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCGGACCTCGTACGTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGttttt                                                                                                                             <  2:1037910/140‑1 (MQ=255)
                    tgctgaactgaaCAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGtttttt                                                                                                                            <  1:568580/141‑1 (MQ=255)
                      cttaactgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTAt                                                                                                                          <  2:591180/140‑1 (MQ=255)
                      ctgaactgaaTAAGAAAAAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTAt                                                                                                                          <  2:591287/143‑1 (MQ=255)
                      ctgaactgaaCAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCTTTGTTTAt                                                                                                                          >  1:95550/1‑143 (MQ=255)
                         aactgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTgg                                                                                                                       >  2:1131009/1‑143 (MQ=255)
                          actgaacAAAAGAGGGTAACGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTggg                                                                                                                      <  2:1017238/143‑1 (MQ=255)
                              aacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGTCgaa                                                                                                                  >  2:583623/1‑143 (MQ=255)
                               agaaaaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaa                                                                                                                 <  2:331814/141‑1 (MQ=255)
                                 aaaaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTCATGACTGGGGCGTTTTTTATTGGGCgaaaga                                                                                                               >  2:385661/1‑143 (MQ=255)
                                  agaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaagaa                                                                                                              <  2:481770/141‑1 (MQ=255)
                                  aaaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGCATATTTCAGCCGCCCCAGTCAGTAATGACTGGGGCGGTTTTTACTGGGCgaaagaa                                                                                                              >  2:765161/1‑143 (MQ=255)
                                  aaaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATGTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGATTTTCATGGGGCgaaagaa                                                                                                              >  2:764775/1‑143 (MQ=255)
                                   aaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaagaaa                                                                                                             >  2:404691/1‑143 (MQ=255)
                                   aaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaagaaa                                                                                                             <  1:611224/143‑1 (MQ=255)
                                   aaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaagaaa                                                                                                             <  1:633045/143‑1 (MQ=255)
                                    aaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTATATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTGTTGGGCGaaagaaaa                                                                                                            >  1:916366/1‑143 (MQ=255)
                                     aaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGaaagaaaag                                                                                                           >  1:1228121/1‑143 (MQ=255)
                                       gcgTATAGTTAGTCGCGCAGGGTACAGAGGTAAGTTGTTCTATCTTTCAGCCCTTATATCTAACACTGAGTGATTTGGCTGAATATTTTAGCCGCCCAAGTCAGTAATGAATGGGGTGTTTTTTATTGGGCGAAAGAAAAGAt                                                                                                         <  2:694581/141‑1 (MQ=255)
                                        agTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATc                                                                                                        >  2:105977/1‑143 (MQ=255)
                                          tAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCg                                                                                                      >  1:109170/1‑143 (MQ=255)
                                            aaGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTAGGCGAAAGAAAAGATCCGTa                                                                                                    >  1:1170966/1‑143 (MQ=255)
                                             ggtgaggcgcgTAGGGTACAGAGGTAAGATGTTCCATCTTTCCGACCTTTTACTTCACGCAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTaa                                                                                                   <  2:630365/136‑1 (MQ=255)
                                              gTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAGTATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAAt                                                                                                  <  2:640443/143‑1 (MQ=255)
                                                tAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTGTATTGGGCGAAAGAAAAGATCCGTAATGc                                                                                                <  2:706153/143‑1 (MQ=255)
                                                 aGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTCAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGcc                                                                                               <  1:277571/143‑1 (MQ=255)
                                                    cgcgTAGGGTACAGAGGTAAGATGTTCTATCTGTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGa                                                                                            <  2:955252/143‑1 (MQ=255)
                                                             tACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATg                                                                                   >  2:718006/1‑143 (MQ=255)
                                                             tACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTCATGCGCCATg                                                                                   >  2:35852/1‑143 (MQ=255)
                                                             tACAGAGGTAAGATGTTCTATCTTTCAGACATATTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTGTTTTATTGGGCGAAAAAAAAGATCCGTAATGCCTAATGCGCGATg                                                                                   >  2:418020/1‑143 (MQ=255)
                                                                  agGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTac                                                                              <  1:1053477/143‑2 (MQ=255)
                                                                  agGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTAt                                                                              <  1:812830/143‑1 (MQ=255)
                                                                       aGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGTGGCGTTCTTTGTTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGc                                                                         <  2:1154042/143‑1 (MQ=255)
                                                                         aTGTTCTATCTTTCAGACCTTTTACTTCAAGTAATCGGATTTGGCTGAATATTTTAGCCGCCTCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCa                                                                       <  1:647084/143‑1 (MQ=255)
                                                                          tGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCaa                                                                      <  1:81024/143‑1 (MQ=255)
                                                                             tCTATCTTTCAGACCCTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCTGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACgg                                                                   <  2:12647/143‑1 (MQ=255)
                                                                              cTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAACAGATCCGTAATGCCTGATGCGCTATGTTTATCCGGCCCACGGt                                                                  >  2:190772/1‑143 (MQ=255)
                                                                              cTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGt                                                                  >  2:838109/1‑143 (MQ=255)
                                                                               tATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTa                                                                 >  2:132631/1‑143 (MQ=255)
                                                                               tATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATACGTAATGCCTGATGCGCTATGTTTAGCTGGCCAAAGGTa                                                                 >  1:649533/1‑143 (MQ=255)
                                                                               tATCTTTCAGACCTTTTACTTCACGTAATCGGATTCGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTa                                                                 <  1:456733/143‑1 (MQ=255)
                                                                                aTCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTTGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCCGGCCCACGGtgg                                                                >  2:1051699/1‑141 (MQ=255)
                                                                                  cTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGaa                                                              <  1:745775/143‑1 (MQ=255)
                                                                                    ttCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAAtt                                                            >  1:334690/1‑143 (MQ=255)
                                                                                       aGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTa                                                         >  2:917104/1‑143 (MQ=255)
                                                                                        gACCTTTTACTTCACGTAATCGGAGTTGGCTGAATATTTTAGCCGCCCCAGACAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTATATCAGGCCAACGGTAGAATTGTaa                                                        >  2:159816/1‑143 (MQ=255)
                                                                                            ttttACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTa                                                    <  2:1279526/143‑1 (MQ=255)
                                                                                            ttttACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTa                                                    <  2:297556/143‑1 (MQ=255)
                                                                                            ttttACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTa                                                    >  1:847213/1‑143 (MQ=255)
                                                                                               caCTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTg                                                 <  1:345184/142‑1 (MQ=255)
                                                                                                 cTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGaa                                              <  1:955655/143‑1 (MQ=255)
                                                                                                  ttCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGACTTGTAATCTATTGAAt                                             >  1:41470/1‑143 (MQ=255)
                                                                                                   tCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAAtt                                            >  2:974447/1‑143 (MQ=255)
                                                                                                   tCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAAtt                                            >  1:696070/1‑143 (MQ=255)
                                                                                                    cACGTAATCGGATTTGGTTGAATATTTTGGCCGGCCCGGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAAttt                                           <  2:163577/143‑1 (MQ=255)
                                                                                                     aCGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGACCCGTAATGCCTGATGCGCTATGTTTATCAATCCAACGGTAGAATTGTAATCTATTGAATTTa                                          >  1:647322/1‑143 (MQ=255)
                                                                                                      cggtgtCGGGTTTGGCTGAATAGTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGTAAGGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTAc                                         <  2:856739/138‑1 (MQ=255)
                                                                                                        tAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACgg                                       <  2:353665/143‑1 (MQ=255)
                                                                                                           tctggtttGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGCGcc                                    >  2:1195017/6‑143 (MQ=255)
                                                                                                           gcGGATTTGGCGGAATATTTTAGCCGCCCCAGTCAGTAAGGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGCCCAACGGTAGAATTGTAATCTATTGAATTTACGGGcc                                    <  2:701577/142‑1 (MQ=255)
                                                                                                            cGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCg                                   <  2:1116611/143‑1 (MQ=255)
                                                                                                              gATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTGTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGa                                 <  1:523430/143‑1 (MQ=255)
                                                                                                                 ttGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTACTCTATTGTTGTTGCGGCCCAGATAc                              >  1:1200383/1‑143 (MQ=255)
                                                                                                                  tGGCTGAATGCTTTAGCCGCCCCGGTCAGTAGTGACTCGGGCGTTTTGTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACg                             <  1:105977/143‑1 (MQ=255)
                                                                                                                   ggCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGc                            <  2:1198283/143‑1 (MQ=255)
                                                                                                                    gCTGAATATTTTAGCCGCCCCAGTCATTACTGACTGGGGc                                                                                                                                   >  1:1006030/1‑40 (MQ=17)
                                                                                                                    gCTGAATATTTTAGCCGCCCCAGTCATTACTGACTGGGGc                                                                                                                                   <  2:1006030/40‑1 (MQ=17)
                                                                                                                     aagAATATTTTCGCGGCCCCAGTCAGTCATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCca                          <  1:339213/141‑1 (MQ=255)
                                                                                                                        aaTATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAACGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATCGCATTTACGGGCCGGATACGCcacct                       >  2:62711/1‑141 (MQ=255)
                                                                                                                        aaTATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACAt                       >  1:272696/1‑143 (MQ=255)
                                                                                                                         attttttGGCCGCCCCAGTCAGTCGTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATc                      <  1:1110962/140‑1 (MQ=255)
                                                                                                                          tatTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAGGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATcc                     >  1:673281/1‑143 (MQ=255)
                                                                                                                           tttttGGCCGCCCGATTGATTAATGACTGGGGCGTTTTTTATTGGGAGAAAGAAAAGAGCCGTAATGCCTGCTGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCg                    <  2:593593/142‑1 (MQ=255)
                                                                                                                           atTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCg                    <  1:682290/143‑1 (MQ=255)
                                                                                                                           atTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAAATGTAAACATTGTAATGTACGGGCCGGATACGCCACATCCg                    >  1:866212/1‑143 (MQ=255)
                                                                                                                                aGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGcaca               <  2:341572/143‑1 (MQ=255)
                                                                                                                                 gcggccCCAGTCAGTAATGGCTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACaa              <  2:254737/140‑1 (MQ=255)
                                                                                                                                 gccgtcCCAGTCAGTAATGTCGGGGGCGTGTTTTATGGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTAGGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACaa              <  2:892492/143‑1 (MQ=255)
                                                                                                                                  gcgccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAg             <  2:434184/142‑1 (MQ=255)
                                                                                                                                     ccccAGTCAGTAATGACTGGGGCGTTTTTTATAAGGCGAAAGAAAACCTCCGTCATGCCTGATGCGCTATGTTCATCAGGCCAACGGTAGAATTGTAATCTAGTGAATTTACGCGCCGGATACGCCACATCCGCCACAAGCAt          >  2:216541/1‑143 (MQ=255)
                                                                                                                                      cccAGTCAGTACTGACTGGGGCGTTTTTTATTGGGCGAACGAAAAGATCCGTAATGCCTGATGCGCTATGTGTATGCGGCCACCGGTAGGACTGTAATCTATTGACTTTACGGGCCGGCTACGCCACATCCGGCACAAGCAtt         >  2:522567/1‑143 (MQ=255)
                                                                                                                                      cccAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCAtt         >  1:855706/1‑143 (MQ=255)
                                                                                                                                      cccAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCAGGCACAAGCAtt         >  2:110675/1‑143 (MQ=255)
                                                                                                                                        cagtcagtAATGACTGGGGCGTTTTTTATTGGGTGAAAGAAAAGATCCGTAATGCTTGATGCGCTATGTTTATCAGGACAACGGTAGAATTGTAATTTATTGAATTTACGGGCCGGATACGCCATATCCGGTACAAGCATTaa       >  2:76578/1‑143 (MQ=255)
                                                                                                                                        cagtcagtAATGACTGGGGCGTTTTTCACTGGGCTAAAGAAAAGATCCGTAACACCGGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTaa       <  1:289577/143‑1 (MQ=255)
                                                                                                                                        cagtcagtAATGACGGGCGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTaa       <  1:392868/143‑1 (MQ=255)
                                                                                                                                          gtcagtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCTGGTTAATGGTAGAATTGTAATTTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAgg     <  1:693751/143‑1 (MQ=255)
                                                                                                                                             agtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCaa  <  2:1011437/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
AAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAA  >  NC_000913/4049844‑4050127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: