Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,049,989 A→C 5.3% noncoding (91/109 nt) spf → small regulatory RNA Spot 42

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,049,9890AC 5.3% 331.1 / 8.7 127noncoding (91/109 nt)spfsmall regulatory RNA Spot 42
Reads supporting (aligned to +/- strand):  ref base A (59/58);  new base C (3/4);  total (63/64)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.24e-02

Only 100 of 129 total aligned reads displayed.

AAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAA  >  NC_000913/4049847‑4050131
                                                                                                                                              |                                                                                                                                               
aaaTTACAAAAAGTGCTTTCGGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTaa                                                                                                                                                 <  1:260775/143‑1 (MQ=255)
   ttACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAACCGGATTTGTCTGAATATTTTAACCGCCCCGCTCAGACATGa                                                                                                                                              >  2:603056/1‑143 (MQ=255)
      cAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTg                                                                                                                                           <  1:616943/143‑1 (MQ=255)
      cAAAAAGTGCTGTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTg                                                                                                                                           <  1:1042576/143‑1 (MQ=255)
       aaaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCGCCAGTCAGTAATGACggg                                                                                                                                          >  2:345184/1‑143 (MQ=255)
       aaaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCATTACTGACTgg                                                                                                                                          <  1:920488/143‑1 (MQ=255)
       aaaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTgg                                                                                                                                          >  1:1116611/1‑143 (MQ=255)
       aaaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTgg                                                                                                                                          >  1:548838/1‑143 (MQ=255)
       aaaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGGAAGAGGTTCTAGCTTTCAGACCTTTTACTTCACGTAATCGGGTTTGGCTGAAGATTTTAGCCGCCCCAGTCAGTGACGACTgg                                                                                                                                          >  1:667461/1‑143 (MQ=255)
              gcgtgcggaactgaacAAAAAAGAGTAAAGTCAGTCGCGGAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGttt                                                                                                                                   <  1:508430/136‑1 (MQ=255)
                tttCGGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGttttt                                                                                                                                 <  2:235841/143‑1 (MQ=255)
                 tgctgaactgaaCAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGtttttt                                                                                                                                <  1:568580/141‑1 (MQ=255)
                   cttaactgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTAt                                                                                                                              <  2:591180/140‑1 (MQ=255)
                   ctgaactgaaTAAGAAAAAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTAt                                                                                                                              <  2:591287/143‑1 (MQ=255)
                   ctgaactgaaCAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCTTTGTTTAt                                                                                                                              >  1:95550/1‑143 (MQ=255)
                      aactgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTgg                                                                                                                           >  2:1131009/1‑143 (MQ=255)
                       actgaacAAAAGAGGGTAACGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTggg                                                                                                                          <  2:1017238/143‑1 (MQ=255)
                           aacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGTCgaa                                                                                                                      >  2:583623/1‑143 (MQ=255)
                           aacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTAATTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGGTTATTATTGGGCgaa                                                                                                                      >  2:233268/1‑143 (MQ=255)
                            agaaaaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaa                                                                                                                     <  2:331814/141‑1 (MQ=255)
                              aaaaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTCATGACTGGGGCGTTTTTTATTGGGCgaaaga                                                                                                                   >  2:385661/1‑143 (MQ=255)
                               agaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaagaa                                                                                                                  <  2:481770/141‑1 (MQ=255)
                               aaaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGCATATTTCAGCCGCCCCAGTCAGTAATGACTGGGGCGGTTTTTACTGGGCgaaagaa                                                                                                                  >  2:765161/1‑143 (MQ=255)
                               aaaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATGTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGATTTTCATGGGGCgaaagaa                                                                                                                  >  2:764775/1‑143 (MQ=255)
                                aaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaagaaa                                                                                                                 >  2:404691/1‑143 (MQ=255)
                                aaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaagaaa                                                                                                                 <  1:611224/143‑1 (MQ=255)
                                aaaaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCgaaagaaa                                                                                                                 <  1:633045/143‑1 (MQ=255)
                                  aaGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGaaagaaaag                                                                                                               >  1:1228121/1‑143 (MQ=255)
                                    gcgTATAGTTAGTCGCGCAGGGTACAGAGGTAAGTTGTTCTATCTTTCAGCCCTTATATCTAACACTGAGTGATTTGGCTGAATATTTTAGCCGCCCAAGTCAGTAATGAATGGGGTGTTTTTTATTGGGCGAAAGAAAAGAt                                                                                                             <  2:694581/141‑1 (MQ=255)
                                     agTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATc                                                                                                            >  2:105977/1‑143 (MQ=255)
                                       tAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCg                                                                                                          >  1:109170/1‑143 (MQ=255)
                                        aaaGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGAGTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGATTTTTATTGGGCGAATGAAAAGATCCGt                                                                                                         >  2:1025451/1‑143 (MQ=255)
                                         aaGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTAGGCGAAAGAAAAGATCCGTa                                                                                                        >  1:1170966/1‑143 (MQ=255)
                                          ggtgaggcgcgTAGGGTACAGAGGTAAGATGTTCCATCTTTCCGACCTTTTACTTCACGCAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTaa                                                                                                       <  2:630365/136‑1 (MQ=255)
                                           gTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAGTATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAAt                                                                                                      <  2:640443/143‑1 (MQ=255)
                                           gTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTGTTTTATTGGGCGAAAGAAAAGATCCGTact                                                                                                      >  2:1071368/1‑141 (MQ=255)
                                            ttAGTCGCGTAGGGTACAGAGCTCACCAGAACAGCTTTTGGGACCTTTTACTTCACGTAATAGGAGTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAGTGACTGGGGCGTTTTTTATTGGGCGAAAGAAGAGATCCGTagcg                                                                                                     >  2:1253846/1‑140 (MQ=255)
                                             tAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTGTATTGGGCGAAAGAAAAGATCCGTAATGc                                                                                                    <  2:706153/143‑1 (MQ=255)
                                              aGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTCAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGcc                                                                                                   <  1:277571/143‑1 (MQ=255)
                                                 cgcgTAGGGTACAGAGGTAAGATGTTCTATCTGTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGa                                                                                                <  2:955252/143‑1 (MQ=255)
                                                          tACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATg                                                                                       >  2:718006/1‑143 (MQ=255)
                                                           aCAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGt                                                                                      <  1:875374/143‑1 (MQ=255)
                                                               agGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTac                                                                                  <  1:1053477/143‑2 (MQ=255)
                                                               agGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTAt                                                                                  <  1:812830/143‑1 (MQ=255)
                                                                  tAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGCGAGCAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAg                                                                               >  2:1153879/1‑143 (MQ=255)
                                                                      aTGTTCTATCTTTCAGACCTTTTACTTCAAGTAATCGGATTTGGCTGAATATTTTAGCCGCCTCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCa                                                                           <  1:647084/143‑1 (MQ=255)
                                                                       tGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCaa                                                                          <  1:81024/143‑1 (MQ=255)
                                                                           cTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAACAGATCCGTAATGCCTGATGCGCTATGTTTATCCGGCCCACGGt                                                                      >  2:190772/1‑143 (MQ=255)
                                                                           cTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGt                                                                      >  2:838109/1‑143 (MQ=255)
                                                                            tATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGTGCTATGTTTATCAGGCCAACGGTa                                                                     >  2:262470/1‑143 (MQ=255)
                                                                            tATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTa                                                                     >  2:132631/1‑143 (MQ=255)
                                                                            tATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATACGTAATGCCTGATGCGCTATGTTTAGCTGGCCAAAGGTa                                                                     >  1:649533/1‑143 (MQ=255)
                                                                            tATCTTTCAGACCTTTTACTTCACGTAATCGGATTCGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTa                                                                     <  1:456733/143‑1 (MQ=255)
                                                                             aTCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTTGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCCGGCCCACGGtgg                                                                    >  2:1051699/1‑141 (MQ=255)
                                                                               cTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGaa                                                                  <  1:745775/143‑1 (MQ=255)
                                                                                 ttCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAAtt                                                                >  1:334690/1‑143 (MQ=255)
                                                                                    aGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTa                                                             >  2:917104/1‑143 (MQ=255)
                                                                                     gACCTTTTACTTCACGTAATCGGAGTTGGCTGAATATTTTAGCCGCCCCAGACAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTATATCAGGCCAACGGTAGAATTGTaa                                                            >  2:159816/1‑143 (MQ=255)
                                                                                         ttttACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTa                                                        >  1:847213/1‑143 (MQ=255)
                                                                                         ttttACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTa                                                        <  2:1279526/143‑1 (MQ=255)
                                                                                         ttttACGTCACGTAAGCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTa                                                        <  2:395879/143‑1 (MQ=255)
                                                                                            caCTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTg                                                     <  1:345184/142‑1 (MQ=255)
                                                                                              cTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGaa                                                  <  1:955655/143‑1 (MQ=255)
                                                                                               ttCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGACTTGTAATCTATTGAAt                                                 >  1:41470/1‑143 (MQ=255)
                                                                                                tCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAAtt                                                >  1:696070/1‑143 (MQ=255)
                                                                                                tCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAAtt                                                >  2:974447/1‑143 (MQ=255)
                                                                                                  aCGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGACCCGTAATGCCTGATGCGCTATGTTTATCAATCCAACGGTAGAATTGTAATCTATTGAATTTa                                              >  1:647322/1‑143 (MQ=255)
                                                                                                   cggtgtCGGGTTTGGCTGAATAGTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGTAAGGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTAc                                             <  2:856739/138‑1 (MQ=255)
                                                                                                     tAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACgg                                           <  2:353665/143‑1 (MQ=255)
                                                                                                        tctggtttGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGCGcc                                        >  2:1195017/6‑143 (MQ=255)
                                                                                                        gcGGATTTGGCGGAATATTTTAGCCGCCCCAGTCAGTAAGGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGCCCAACGGTAGAATTGTAATCTATTGAATTTACGGGcc                                        <  2:701577/142‑1 (MQ=255)
                                                                                                         cGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCg                                       <  2:1116611/143‑1 (MQ=255)
                                                                                                           gATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTGTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGa                                     <  1:523430/143‑1 (MQ=255)
                                                                                                              ttGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTACTCTATTGTTGTTGCGGCCCAGATAc                                  >  1:1200383/1‑143 (MQ=255)
                                                                                                               tGGCTGAATGCTTTAGCCGCCCCGGTCAGTAGTGACTCGGGCGTTTTGTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACg                                 <  1:105977/143‑1 (MQ=255)
                                                                                                                ggCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGc                                <  2:1198283/143‑1 (MQ=255)
                                                                                                                 gCTGAATATTTTAGCCGCCCCAGTCATTACTGACTGGGGc                                                                                                                                       <  2:1006030/40‑1 (MQ=17)
                                                                                                                 gCTGAATATTTTAGCCGCCCCAGTCATTACTGACTGGGGc                                                                                                                                       >  1:1006030/1‑40 (MQ=17)
                                                                                                                  aagAATATTTTCGCGGCCCCAGTCAGTCATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCca                              <  1:339213/141‑1 (MQ=255)
                                                                                                                     aaTATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAACGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATCGCATTTACGGGCCGGATACGCcacct                           >  2:62711/1‑141 (MQ=255)
                                                                                                                     aaTATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACAt                           >  1:272696/1‑143 (MQ=255)
                                                                                                                      attttttGGCCGCCCCAGTCAGTCGTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATc                          <  1:1110962/140‑1 (MQ=255)
                                                                                                                        atTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCg                        <  1:682290/143‑1 (MQ=255)
                                                                                                                        atTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAAATGTAAACATTGTAATGTACGGGCCGGATACGCCACATCCg                        >  1:866212/1‑143 (MQ=255)
                                                                                                                          tttAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCCCACCCGGc                      >  2:464225/1‑143 (MQ=255)
                                                                                                                             aGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGcaca                   <  2:341572/143‑1 (MQ=255)
                                                                                                                              gcggccCCAGTCAGTAATGGCTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACaa                  <  2:254737/140‑1 (MQ=255)
                                                                                                                              gccgtcCCAGTCAGTAATGTCGGGGGCGTGTTTTATGGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTAGGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACaa                  <  2:892492/143‑1 (MQ=255)
                                                                                                                               gcgccCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAg                 <  2:434184/142‑1 (MQ=255)
                                                                                                                                  ccccAGTCAGTAATGACTGGGGCGTTTTTTATAAGGCGAAAGAAAACCTCCGTCATGCCTGATGCGCTATGTTCATCAGGCCAACGGTAGAATTGTAATCTAGTGAATTTACGCGCCGGATACGCCACATCCGCCACAAGCAt              >  2:216541/1‑143 (MQ=255)
                                                                                                                                   cccAGTCAGTACTGACTGGGGCGTTTTTTATTGGGCGAACGAAAAGATCCGTAATGCCTGATGCGCTATGTGTATGCGGCCACCGGTAGGACTGTAATCTATTGACTTTACGGGCCGGCTACGCCACATCCGGCACAAGCAtt             >  2:522567/1‑143 (MQ=255)
                                                                                                                                   cccAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCAtt             >  1:855706/1‑143 (MQ=255)
                                                                                                                                   cccAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCAGGCACAAGCAtt             >  2:110675/1‑143 (MQ=255)
                                                                                                                                     cagtcagtAATGACTGGGGCGTTTTTTATTTGGCGAAAGAAAAGAGCCGTAATGCCTGATGCGCTATGGTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTaa           <  2:141205/143‑1 (MQ=255)
                                                                                                                                     cagtcagtAATGACTGGGGCGTTTTTTATTGGGTGAAAGAAAAGATCCGTAATGCTTGATGCGCTATGTTTATCAGGACAACGGTAGAATTGTAATTTATTGAATTTACGGGCCGGATACGCCATATCCGGTACAAGCATTaa           >  2:76578/1‑143 (MQ=255)
                                                                                                                                     cagtcagtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTaa           <  1:300013/143‑1 (MQ=255)
                                                                                                                                     cagtcagtAATGACGGGCGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTaa           <  1:392868/143‑1 (MQ=255)
                                                                                                                                       gtcagtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCTGGTTAATGGTAGAATTGTAATTTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAgg         <  1:693751/143‑1 (MQ=255)
                                                                                                                                          agtAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCaa      <  2:1011437/143‑1 (MQ=255)
                                                                                                                                              aTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGACTTTACGGGCCGGATACGCCACATCCGGCACGAGCATTAAGGCAAGaaa  >  1:1233515/1‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                               
AAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAA  >  NC_000913/4049847‑4050131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: