| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,051,259 | G→T | 6.5% | noncoding (224/245 nt) | csrC → | small regulatory RNA CsrC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,051,259 | 0 | G | T | 6.5% | 399.7 / 14.7 | 139 | noncoding (224/245 nt) | csrC | small regulatory RNA CsrC |
| Reads supporting (aligned to +/- strand): ref base G (65/65); new base T (4/5); total (69/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.38e-02 | |||||||||||
Only 100 of 145 total aligned reads displayed.
ACAAACGTCCGGAGACGTAATTAAACGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCAAAGGTCATGCAAAAGCGCGTCGA > NC_000913/4051120‑4051400 | aCAAACGTCCGGAGACGTAATTAAACGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTaa > 1:234105/1‑143 (MQ=255) aaaCGTCCGGAGACGTAATTAAACGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGCGTGTTGGCGGCCTCCCAGGATTGTAAGACCCGTCAAGGGTTCTGAGTCAGGAAAAAAGGCGACCGaataata > 2:545628/1‑142 (MQ=255) ctgccGGAGCTGTATTTAATCGGAAATGGAGCCATTGCGGCTTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCTTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGt < 2:733386/140‑1 (MQ=255) gtgcGGAGACGTAAAAAAACAGGAGTGGAATCAACACGGATGGTTCGGGAAAAAGGAAAAACAGGACGCCTGGACGGCCCGAAAAGATTGTAAGCCCTTTTAAGGGTAAAAAAAAAAAAAAAAAGGCGACAGAGTAATCTGTc < 2:493308/140‑1 (MQ=255) gTCGGGAGACGTAATTAAACGGAAATGGAAGCTACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTc < 2:399246/143‑1 (MQ=255) gTCCGGAGACGTAATGAAACGGAAATGGAATCAACACGGATTGTGTCGGCTAAAGGAAAAGCAGGGTGTGTTGGCGGCCTGCAAGGGTTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTc < 2:903814/143‑1 (MQ=255) tCCGGAGACGTAATTAAACGGAAATGGAATCAAGACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGATTACTCTGTCg < 2:817183/143‑1 (MQ=255) cGGAGACGTAATTAAACGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGcc > 2:363300/1‑143 (MQ=255) ggAGACGTAATTAAACGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTTAGGAAAAAAGGCGACAGATTACTCTGTCGCCt < 2:672024/143‑1 (MQ=255) gagaCGTAATTAAACGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGATTACTCTGTCGCCtt < 2:329826/143‑1 (MQ=255) cGTAATTAAACGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCtttttt > 2:708547/1‑143 (MQ=255) gTAATTAAACGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTc > 1:686128/1‑143 (MQ=255) tAATTAAACGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAAAGTAATCTGTCGCCTTTTTTCt > 1:914406/1‑143 (MQ=255) actAAAGGGAAAGGGAATCAACACGGATTGTTGCGGCTAAAGGAAAACCAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCttt < 2:865365/141‑1 (MQ=255) aTTAAACGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCttt > 1:672875/1‑143 (MQ=255) aaCGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTttgctt < 2:35048/143‑1 (MQ=255) aCGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTttgcttg > 1:450885/1‑143 (MQ=255) ggAAAGTGAATGAATGCGGAGTGTTGCTGCTAAAGGAAAACCAGGGTGTGTTGGCGGCCTGCAAGGATTGGAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTtgcttgct < 2:1024814/143‑1 (MQ=255) aaacgtaaTCAACATGGTCTGTCCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAAGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCttt < 2:163412/137‑1 (MQ=255) aTGGGATCAGCTCGGGTTGGTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCt < 2:754395/143‑1 (MQ=255) aTGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGAGTGTTGGCGGCCTGCAAGGAAAGTAAGACCCGTTAAGGGTTATGAGTCCGCAACACAGTCGACAGAGAAAACTGTCGCCTTTTTTCTTTGCTTGCTTTCt > 2:1102658/1‑143 (MQ=255) gAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGACTGGCCTTGTTGTAAGCAAAGTCATCGGTGATGAGTCAGGAAAAAAGGCGACAGAGTGATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGtt > 1:594504/1‑143 (MQ=255) aaTCAACACGGGTTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTa < 1:8178/143‑1 (MQ=255) aTCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTCGCGGCCTGCAAGGATTGTAAGCCCCGGTAAGGGTTATGAGTCAGGAAACAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGtttg > 1:55940/1‑141 (MQ=255) aaCACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGAtt < 1:821991/143‑1 (MQ=255) aaCACGGATTGTTCCGGACCATTAACACACAGTGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGAtt < 1:1138983/143‑1 (MQ=255) acacGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTGTGAGTCAGGAAACAAGGCGACAGAGTAAGCTGTCGCGTCTTTTCTTTGCTTGCTTTCTGTTAGATTc > 2:311474/1‑143 (MQ=255) acacGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTc > 1:1160762/1‑143 (MQ=255) acacGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTc > 1:45197/1‑143 (MQ=255) acGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTccg > 2:61584/1‑143 (MQ=255) acGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAAATTccg > 2:955024/1‑143 (MQ=255) acGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGATAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGGTGGATTccg > 2:1084275/1‑143 (MQ=255) cGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTccgc < 1:1055517/143‑1 (MQ=255) ggATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTccgcc < 1:733250/143‑1 (MQ=255) gttttttCCGGCTAAAGGAAAAACAGTGTGTGTTGGCGGCCTGTAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAATGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTccgccg < 2:303845/138‑1 (MQ=255) agtGTTCCGGCTAAAGGAAAAACAGGGTGGTTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCcgccgc < 1:230926/141‑1 (MQ=255) aTTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCcgccgc > 1:211561/1‑143 (MQ=255) ttCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAAt > 1:399571/1‑143 (MQ=255) ttCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAAt > 1:572211/1‑143 (MQ=255) ttCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAAt < 1:996487/143‑1 (MQ=255) ttCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAAt > 2:636517/1‑143 (MQ=255) cgtAAACGAAACACAGGGTGTGGTGGCGGCCTGCAAGGATTTTAAGACCCGTTAATGGTTATGATGCAGGAAAAAAGGCGCCATAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCtata < 1:847730/141‑1 (MQ=255) aaGGAAAAGCAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCCTTCTGTTAGATTCCGCCGCAAATCTATACTGa < 2:669090/143‑1 (MQ=255) aaGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAAGCTGTCGCCTTTTGTCTTTGCTTGCTCTCTGTTAGAGGGCACCGCAAACCCATACTGa > 2:954902/1‑143 (MQ=255) aGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGaa < 1:459393/143‑1 (MQ=255) ggAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAAt > 1:523326/1‑143 (MQ=255) gAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATa > 1:269276/1‑143 (MQ=255) aaaaaCAGGGTGTGTTGGCGGCATGCACGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGCTAGATTCCGCCGCAAATATATACTGAATaa > 1:419083/1‑143 (MQ=255) aaaCAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGGAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTATATTCCGCCGTAAATCTATCCTGAATaaaa > 1:688901/1‑143 (MQ=255) aCAGGGTGTGTTGGCGGCCTGCAAGGCTTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTCGATTCCGCCGCAAGTATATGCTGAATCAATCg > 1:262991/1‑143 (MQ=255) aGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGc < 2:821095/143‑1 (MQ=255) aGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGc > 1:1047512/1‑143 (MQ=255) gtgtgtTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTGTCTGTTAGGTTCCGCCGCGAGTCTATACTGAGTGAGACGGCGaa > 1:808583/1‑143 (MQ=255) gtgtgtTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTGTCTTTGCTTGCTTTGTGTTAGATGCCGCCGCAAATCTTTGCTGAGTGGAACGGCttc > 1:248030/1‑141 (MQ=255) ttGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACCGCGTAATCTGTCGCCGCTTTTCTTTGCTTGCTTTCTGTGAGATTCCGCCGCACATCTATACTGACTCACACTGCTaacacac > 2:451946/1‑138 (MQ=255) ttGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTCGCTTTCTGTTAGATGCCGCCGCAAGTCTACACTGAATAACACGGCTAAAAgcc > 1:1035868/1‑141 (MQ=255) ggcggcCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCACATCTATACTGAATAAAACGGCTAAAAGACGa > 1:1124760/1‑143 (MQ=255) gcggcCCGCAAGGATTGTAAGACCCGCTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGaa < 1:771186/143‑1 (MQ=255) ccggcCTGCAAGGATTGTAAGAGCCGTTAAGGGGTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTGTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGaa < 1:190356/142‑1 (MQ=255) cggcCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTGTACTGAATAAAACGGCTAAAAGACGAAc > 1:153956/1‑143 (MQ=255) cggcCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAACATATACTGAATAAACCAGCTGAAAGACCAAc > 1:707212/1‑143 (MQ=255) cTGCAAGGATTGGAGGACCCGTTAAGGGTGATGAGGCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCAtt < 2:757855/143‑1 (MQ=255) gCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTAt < 2:450885/143‑1 (MQ=255) cAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCCACTCTATACTGAATAAAACGGCTAAAAGACGAACCATTATg > 2:411326/1‑143 (MQ=255) aaGGGTTGTAAGACCCGCTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTTCTTGCCTTCTGATAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGa < 2:1114166/143‑1 (MQ=255) aGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAACAGGCGACAGAGTACTCTGTCGACTTCTTTCTTTGCTTGCTCTCTCTCAGATTCCGCCGCAAATCTATCCTGAATACAACGGCCACAAGACGAACCATCATGac > 2:571080/1‑142 (MQ=255) aGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATCAAACGGCTGACAGACGAAGCATTATGaa > 1:375221/1‑143 (MQ=255) aGGATCGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTGCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGaa < 2:69099/143‑1 (MQ=255) tgtagtaCCCGTTAAGGGGTATGAGTGAGGAAAAAATGCGACAGAGTAAGCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTGAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACcat < 2:347302/137‑1 (MQ=255) tGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACcat < 1:620914/143‑1 (MQ=255) tGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACcat < 1:1055495/143‑1 (MQ=255) gtacaccccGTTCAGGGATATAAGTCAGGAAAAAACGAGACAGCGTAATATGTCGTCCTGTTGCTGAGCTAACTTTCTGTTAGATTCCGCCGCAAATCTATACTGAACAAAACGGCTAAAACACGAACCATTATGAAACcatc < 1:291318/137‑1 (MQ=255) gACCCGTTAAGGGTCATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCt < 1:352689/143‑1 (MQ=255) aCCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTTTTAGATTCCGCCGCAAATCTATACTGAATAGAACGGCTAACAGACGAACCATTATGAAACCATCGTCtt > 1:1000760/1‑143 (MQ=255) cGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCaa > 1:1141484/1‑143 (MQ=255) cGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCaa < 1:127767/143‑1 (MQ=255) tAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATATTCAAACt > 1:1110846/1‑143 (MQ=255) aGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATATTCCAACTCa < 2:1193076/143‑1 (MQ=255) gggTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTAGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAATCGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCAc < 2:572211/143‑1 (MQ=255) gTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTACAAACACACgg > 2:329494/1‑142 (MQ=255) ttATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCATTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTCAAAAcagaacca > 2:678225/1‑136 (MQ=255) ttATGAGGCAGTAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATATATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACgca < 2:1183896/143‑1 (MQ=255) aTGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACgcagc > 2:838050/1‑143 (MQ=255) aTGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCCTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACgcagc > 1:665746/1‑143 (MQ=255) aGTCAGTACAAACGGCGACAGCGTAATCTGCCGCCCTAACACCTTGGGGGCGTGCTGTTAGATTCCGCCGCAAATCCATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCaaa < 1:928321/143‑1 (MQ=255) aGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCaaa > 2:1142956/1‑143 (MQ=255) gTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCAAAg < 1:271259/143‑1 (MQ=255) gTCAGGAAAAAAGGCAACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCAAAg < 2:61429/143‑1 (MQ=255) gagaaaaGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCAAAGGTCAt > 1:778266/4‑143 (MQ=255) aaaaaaGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCACACTCACGCAGCAAAGGTCAta > 2:782247/1‑142 (MQ=255) aaaaaaGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCAAAGGTCATg < 2:190050/143‑1 (MQ=255) agaaaGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATAGTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCAAAGGTCATGc > 1:250933/3‑143 (MQ=255) aaGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTAGACTGAATAAAACGGCTAAAAGACGAAGCATTATGGAACCATCATCTTCAAACTCAGGCAGCAAGGGTCAGGCaag > 1:1462/1‑142 (MQ=255) aGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCAAAGGTCATGCaaaa < 1:507260/143‑1 (MQ=255) aGGCGACAGAGTAAGCTGTCGCCTTTGTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATCCTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCAAAGGTCATGCaaaa < 2:1035868/143‑1 (MQ=255) cGACAGATTACTCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCCAACTCACGCAGCAAAGGTCATGAAAAAacg > 2:833552/1‑143 (MQ=255) cGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCATTCTGTTAGATTCCGCCGCAAATCTATACTGACTAAACCGGCTAAAAGACGAACCATTATGAACCCATCATCTTCACGCTCACGCAGCGAAGGTCATGCAAAAgcg > 1:826441/1‑143 (MQ=255) aCAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAACACGAACCATTATTAAACCATCATCTTCAAACTCACGCAGCAAAGGTCATGCAAAAGcgcg < 1:734627/143‑1 (MQ=255) agagTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCAAAGGTCATGCAAAAGCGCGTc < 1:1220994/143‑1 (MQ=255) agTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCAACGGTCATGCAAAAGCGCGTCGa > 1:375378/1‑143 (MQ=255) | ACAAACGTCCGGAGACGTAATTAAACGGAAATGGAATCAACACGGATTGTTCCGGCTAAAGGAAAAACAGGGTGTGTTGGCGGCCTGCAAGGATTGTAAGACCCGTTAAGGGTTATGAGTCAGGAAAAAAGGCGACAGAGTAATCTGTCGCCTTTTTTCTTTGCTTGCTTTCTGTTAGATTCCGCCGCAAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTATGAAACCATCATCTTCAAACTCACGCAGCAAAGGTCATGCAAAAGCGCGTCGA > NC_000913/4051120‑4051400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |