Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 125,085 | 2 bp→CA | 100% | coding (2069‑2070/2664 nt) | aceE → | pyruvate dehydrogenase E1 component |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 125,085 | 0 | T | C | 100.0% | 199.4 / NA | 65 | I690T (ATC→ACA) | aceE | pyruvate dehydrogenase E1 component |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (32/33); total (32/33) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
* | NC_000913 | 125,086 | 0 | C | A | 100.0% | 183.4 / ‑6.7 | 65 | I690T (ATC→ACA) | aceE | pyruvate dehydrogenase E1 component |
Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (30/33); total (32/33) | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TCACAGCCACATTCAGTCGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACATCACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAGCTGCTCGGCTCCGGTTCTA > NC_000913/124948‑125219 || tCACAGCCACATTCAGTCGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTTTGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTa > 1:1140990/1‑143 (MQ=255) cacaTTCCGTCGCTGAGCATCACGAACTGTAGCTCGTACGACCCGGCGTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGaa < 2:784001/143‑1 (MQ=255) cacaTTCAGTCGCTGATTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGaa < 2:308749/143‑1 (MQ=255) cacaTTCAGTCGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCCTCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACCAGAGAACGTTTACTACTACCCAACTACGCTGaa > 1:214888/1‑143 (MQ=255) cacaTTCAGTCGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGaa < 2:223041/143‑1 (MQ=255) aTTCAGTCTCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGa > 2:236007/1‑143 (MQ=255) tCAGTCGCTGACTATCCCGAACTGTATCTCTGACGGCCCGGCTTACGATTACGAATTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGaaa < 1:930465/143‑1 (MQ=255) gTCGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCGTCATGCACGACGGTCTGGAGCGTATGTACGGTGACACACAAGAGAACGTTTACCACTACCCAACTACGGTGAAGCAAAACt > 2:559972/1‑143 (MQ=255) tCGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGCTCTGGAGCGTATGTACGGTGAAAAACCAGAGGACGTTTACTACTCCACAACTCCGCTTGACGAACACtc > 1:393238/1‑142 (MQ=255) cGCTGACCATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTAc < 1:325276/143‑1 (MQ=255) gCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTTAACAGCGTGAGCCCGTTTCCTCCTACACTCCTACGCTGAACGAAtactaca > 1:413050/1‑142 (MQ=255) tGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACcac > 1:604849/1‑143 (MQ=255) aCTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACAt > 1:1015850/1‑143 (MQ=255) aTCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGTTGACGGGTGGAGGTACGGTGAACACCACGAGCAAAGATACTACGACACAACTACGCTTAGGGAGAGCTACCACATGcc > 1:1264750/1‑143 (MQ=255) aTCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGcc < 1:211961/143‑1 (MQ=255) cccGAACTTGATGTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCgg < 1:924126/143‑1 (MQ=255) ccGAACTGTATCTCTTACGACCCGGCTTACGCCTACGAAGTTGCTGTCATAATGCATGACGGTCCGGCGCGTATGTACGGTGAAAAACAAGAGCACGATTACTACTACACAACTACGCGGAACGAAAACTCCcgcaaagccgc > 2:78351/1‑136 (MQ=255) aaCTGTATCTCTTACGCCCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGCCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCCCATGCCGGCAAt < 2:633066/143‑1 (MQ=255) aaCTGTATCTCTTACGACCCGGCTTACGCGTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAAt < 1:635089/143‑1 (MQ=255) tGTATCTCTTACGCCCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGcc < 1:955966/143‑1 (MQ=255) tATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCgg > 1:430478/1‑143 (MQ=255) tctcTTACGACCCGGCTTACGGGTACGGAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTTTGTACGGTGAAAAACAAGAGAACGTTTACTACTACGCAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGaa < 2:389547/143‑1 (MQ=255) ttACGACCCGGCTTACGATTACGAAGTTGACGTCTTCATTCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTg > 2:276734/1‑143 (MQ=255) cGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCACTGCCGGAAGGTGCTg < 2:1079226/143‑1 (MQ=255) cGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTg < 2:1113986/143‑1 (MQ=255) gACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTCCACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGa < 2:592794/143‑1 (MQ=255) aCCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGACCGCCAACTACCACATGCCGGCACTGCCAGCAGGTCCtaaa > 1:467160/1‑140 (MQ=255) cccGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGGCTGGAGAGTATGTACGGTAAAAAACAAGAGAACGTTTACTACTACACAACTAAACTGAACGAAAAATACCACATGGCGCCAAAGCAGGGAGGTGCTAAgg > 2:791383/1‑143 (MQ=255) cGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGaa < 2:650133/143‑1 (MQ=255) ggCTTACGCTTACGAAGTTGCTGGCTTCGTGCATTACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAg > 2:779390/1‑143 (MQ=255) ttacgAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTa > 1:621515/1‑143 (MQ=255) acgacgCTGCTCTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTaaa < 2:935088/143‑1 (MQ=255) acgAAGTTGCTGTCAGCATGCATGACGGTCTGGAGCGTATGGACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTaaa < 1:459915/143‑1 (MQ=255) cgAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAg < 1:332526/143‑1 (MQ=255) gAAGTTGGTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAACGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAgg > 2:1142543/1‑143 (MQ=255) gTTGCTGTCATCATGCATGACGGTCTGGCGCGTATGTACGGTGAAAAACAAGAGAACGTCGACTACTACACAACTGCGCTGAACGCACACTACCACACGCCGGCGACACCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTAt < 2:274567/143‑1 (MQ=255) ttGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATc > 1:577451/1‑143 (MQ=255) gCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTa > 1:568614/1‑143 (MQ=255) tcatGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTc < 2:1259768/143‑1 (MQ=255) tcatGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTc > 1:249550/1‑143 (MQ=255) tcatGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTc < 2:1015850/143‑1 (MQ=255) catgcatgACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACtgg > 1:1214654/1‑141 (MQ=255) atgcatgACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGa > 2:710744/1‑143 (MQ=255) ggTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGc > 1:1053657/1‑79 (MQ=255) ggTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGc < 2:1053657/79‑1 (MQ=255) ggTCTGGAGCGGATGGACGGTGAAAAACAAGAGAACGGTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGa < 2:955920/143‑1 (MQ=255) gTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGaa < 1:1003028/143‑1 (MQ=255) tCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACACACTCGCAACTATTGAAg > 1:1202081/1‑143 (MQ=255) tCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAg < 1:240049/143‑1 (MQ=255) tGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAGCTATTGAAGGt > 1:846058/1‑143 (MQ=255) ggAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTa > 1:754727/1‑143 (MQ=255) cgAGCGTATCTACGGTGAAAAACAAGAGAACGGTTACTACGACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTa < 1:206894/142‑1 (MQ=255) gAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACCACTACGCTGAACGACAACTACCACATGCCGGCAATGCCGGAAGGTGCTAAGGAAGGTATCGGTAACGGTATCTACAAACTCGAAACTATTAGAGGtgg > 2:133644/1‑141 (MQ=255) ctATGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGAAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCaaa < 2:81585/142‑1 (MQ=255) tGTACGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGt < 2:370986/143‑1 (MQ=255) tACGGTGAAAAAAAAGAGAACGTTTACCACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACGATTGAAGGTAGCAAAGGTaa < 1:1129338/143‑1 (MQ=255) aCGGTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTaaa < 2:150827/143‑1 (MQ=255) ggTGAAAAACAAGAGAACGTTTACTACTACACAACTACGCGGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAAGTATCTACAAACCTGAAAACATGAAAAAAAACAAAGGTAAAGt > 2:701629/1‑143 (MQ=255) gAAAAACAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCa < 1:251170/143‑1 (MQ=255) aaaaaCAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAg < 2:548177/143‑1 (MQ=255) aaaCAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAgct > 1:1089169/1‑143 (MQ=255) aaCAAGAGAACGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGACGGAAGGTGCTGAGGACGGTATCCGTAAAGGTATCTACAAACTCGAAACTCTTGAAGGTAGCAAAGGTAACGTTCAgctg > 1:1187070/1‑143 (MQ=255) aaCGTTTACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGACACTATTGAAGGTAGCAAAGGTAAAGTTCAGCTGCTCGGCTc > 2:880663/1‑143 (MQ=255) tttACTACTACACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAGCTGCTCGGCTCCGGt > 1:1081756/1‑143 (MQ=255) ctactacACAACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAGCTGCTCGGCTCCGGTTCTa < 1:838701/143‑1 (MQ=255) || TCACAGCCACATTCAGTCGCTGACTATCCCGAACTGTATCTCTTACGACCCGGCTTACGCTTACGAAGTTGCTGTCATCATGCATGACGGTCTGGAGCGTATGTACGGTGAAAAACAAGAGAACGTTTACTACTACATCACTACGCTGAACGAAAACTACCACATGCCGGCAATGCCGGAAGGTGCTGAGGAAGGTATCCGTAAAGGTATCTACAAACTCGAAACTATTGAAGGTAGCAAAGGTAAAGTTCAGCTGCTCGGCTCCGGTTCTA > NC_000913/124948‑125219 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |