| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3792764 | 102 (2.110) | 7 (0.160) | 7/260 | 4.4 | 7.0% | intergenic (‑213/+62) | kbl/htrL | 2‑amino‑3‑ketobutyrate CoA ligase/protein HtrL |
| ? | NC_000913 | = 3792768 | 91 (2.040) | intergenic (‑217/+58) | kbl/htrL | 2‑amino‑3‑ketobutyrate CoA ligase/protein HtrL | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGATAACGCGTTAACACTTCTGCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3792612‑3792764‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatgatgcTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCATTATGCCCAGCCAAAACTGTACAGTTTTTCTACTATCTGTAGGTGTTGAGAGACATCAAGTTACACGTTATTTATCCTGAATTTTGCAGAAGT < NC_000913/3792768‑3792627 AGATAACGCGTTAACACTTCTGCAAAATTAAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAA < 1:689511/143‑1 tatgccTTAACATTTCTTAAAAATTCTGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAAAAAAACTGTACAGTTTTGGCTGGTCATAAGGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAA < 1:247602/137‑1 GCGTTAACACTTCTGCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGTCTGGGCATAATGATGATTGATTTTACCGCATTGCTATAAAAACAAAAAATta > 2:559453/1‑141 GCGTTAACACTTCTGCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGA > 2:176012/1‑143 GTTAACACTTCTGCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATCATTGATTTTAATGCATTTATATAAAACGAAAAAATGATa > 2:496657/1‑142 CAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCTTTGGCATCATT < 2:166088/143‑1 AAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGTTTTTTTTAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCTTTGGCATCATTT < 1:4539/143‑1 AATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAATAATGATGCTTTGGCATCATTTTT < 2:779481/143‑1 ATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCTTTGGCATCATTTTTT < 2:515029/143‑1 GATAAAGAACGTGTAACTTGATGTCTTTCAACACCTATTGATAGTAGAAAAACTGTACTGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCTTTGGCATCATTTTTTCTTTTT < 2:133934/143‑1 AACGTGGAAGTTGAGGTCTATCAACACCGACAGAGAGGAGAAAAACTGTACAGTGTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCTTTGGCATCATTTTTTCTTTTTATATCAA < 1:465684/143‑1 ACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGCTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCATTA < 1:176012/143‑1 AAAAATGATGCTGTTGTATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCATTATGCCCAGCTAAAACTGTACAGTTTTTCTACTATCTGTGGGTGTTGAGAGACATCAAGTTACACGTTATTTATGCTGAATT < 2:795875/143‑1 AAAAATGATGCGTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCATTATGCCCAGCCAAAACTGTACAGTTTTTCTACTATCTGTAGGTGTTGAGAGACATCAAGTTACACGTTATTTATCCTGAATT < 2:297471/143‑1 AAAATGATGCTTTGGCATCATTTTTTCTTTGTATATCAATGCAGTAAAATCAATCATCATTATGCCCAGCCAAAACTGTACAGTTTTTCTACTATCTGTAGGTGTTGAGAGACATCAAGTTACACGTTATTTATCCTGAATTT < 2:279167/143‑1 AAATGATGCTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCATTCATCATTATGCCCAGCCAAAACTGTACAGTTTTTCTACTATCTGTAGGTGTTGAGAGACATCAAGTTACACGTTATTTATCCTGAATTTT < 2:101978/143‑1 AAATGATGCTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCATTATGCCCAGCCAAAACTGTACAGTTTTTCTACTATCTGTAGGTGTTGAGAGACATCAAGTTACACGTTATTTATCCTGAATTTT < 2:802607/143‑1 AAATGATGCTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCATTATGCCCAGCCAAAACTGTACAGTTTTTCTACTATCTGTAGGTGTTGAGAGACATCAAGTTACACGTTATTTATCCTGAATTTT < 1:486210/143‑1 acTGATGCTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCATTATGCCCAGCCAAAACTGTACCGTTTTTCTACTATCTGTAGGTGTTGAGAGACATCAAGTTACACGTTATTTATCCTGAATTTTG < 1:534553/141‑1 AATGATGCTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCATTATGCCCAGCCAAAACTGTACAGTTTTTCTACTATCTGTAGGTGTTGAGAGACATCAAGTTACACGTTATTTATCCTGAATTTTG < 2:447321/143‑1 AATGATGCTTTGGCATCATTTTGTCTTTTTATATCAATGCAGTAAAATCAATCATCATTATGCCCAGCCAAAACTGTACAGTTTTTCTACTATCTGTAGGTGTTGAGAGACATCAAGTTACACGTTATTTATCCTGAATTTTG < 2:568840/143‑1 CTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCATTATGCCCAGCCAAAACTGTACAGTTTTTCTACTCTCTGTAGGTGTTGAGAGACATCAAGTTACACGTTATTTATCCTGAATTTTGCAGAAGT > 1:336370/1‑143 AGATAACGCGTTAACACTTCTGCAAAATTCAGGATAAATAACGTGTAACTTGATGTCTCTCAACACCTACAGATAGTAGAAAAACTGTACAGTTTTGGCTGGGCATAATGATGATTGATTTTACTGCATTGATATAAAAAGAAAAAATGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3792612‑3792764‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatgatgcTTTGGCATCATTTTTTCTTTTTATATCAATGCAGTAAAATCAATCATCATTATGCCCAGCCAAAACTGTACAGTTTTTCTACTATCTGTAGGTGTTGAGAGACATCAAGTTACACGTTATTTATCCTGAATTTTGCAGAAGT < NC_000913/3792768‑3792627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |