New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1632779 =	34 (0.700)	7 (0.140)	6/282	5.2	17.1%	intergenic (‑494/‑111)	ydfJ/ynfT	putative transporter YdfJ/Qin prophage; protein YnfT
	?	NC_000913	= 2290113	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTAATTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCCT  >  NC_000913/1632637‑1632921                                                                                                                                               |                                                                                                                                               aCCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATACGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCGTGATTTTTGCTGTCACCTGt                                                                                                                                                >  1:172547/1‑143 (MQ=255)   cTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTa                                                                                                                                              >  1:882129/1‑143 (MQ=40)   cTTGATATTGTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTa                                                                                                                                              <  2:254322/143‑1 (MQ=255)   cTTGATATGTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTa                                                                                                                                              <  2:272070/143‑1 (MQ=255)      gATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATATTTTTAAACCCAATCCGTGTAGATTCTCTACATAAGATAGTTTGTAGTTGCCGTTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCa                                                                                                                                           <  1:51398/143‑1 (MQ=255)            tttctttttcAGATAAAAACTGTTCTCTATGTATACTGTTAAACCCAGTCCGTGTAGAGGCCCTACATAAGATCGTTTGCAGTTGCAGCTTCAGATGACGCCGTAAGCCGCCTGTATTTTGCGGCCACCTGTTGGccatgccg                                                                                                                                     >  1:360170/1‑136 (MQ=255)              tctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGta                                                                                                                                   <  2:685594/143‑1 (MQ=40)              tctttttcAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGta                                                                                                                                   <  2:370369/143‑1 (MQ=40)                        aTAAAAACTGTTATCTATGTATACTTTTAAACCCAGTCCGTGTAGAGTCTCTACAGAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAACCCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAAc                                                                                                                         <  1:407032/143‑1 (MQ=255)                            gaaCTGTTATCGATGTATACTTTTAAACCCAGTCCGTGTAGAGTCTCTGCATGAGATAGTTTGCCGCTTGAGCGTCATGTTGCGCCATAATCCGGCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACa                                                                                                                     <  2:313718/142‑1 (MQ=11)                            aaaCTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATACTTTGCAGTGGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACa                                                                                                                     <  2:310724/143‑1 (MQ=255)                            aaaCTGTTAGCGCTGTGTCCTGTTAAACCCAATCCGTGTAGAGTCTGTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACa                                                                                                                     <  2:299258/143‑1 (MQ=11)                                 gctATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGtt                                                                                                                <  1:364860/141‑1 (MQ=39)                                 gTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGtt                                                                                                                <  1:106969/143‑1 (MQ=38)                                                ttttAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGCCACTGTTTATCTACTAACTTTa                                                                                                 >  1:320577/1‑143 (MQ=255)                                                 tttAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACCATGTTTATCTACGAACTCTaa                                                                                                >  2:606787/1‑143 (MQ=255)                                                       cccAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAACTTGGGCCATAAACCGCCGGATTTTTGCTGCCACCTGCTAGCATTCCTGTATACCGGAAACGACAACGTTTATGTACGAACTTTagactcaa                                                                                          >  2:189523/1‑136 (MQ=11)                                                                tgtCGAGTCTTTACATAACATAGTTTTCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATaa                                                                                 <  2:839013/143‑1 (MQ=255)                                                                tgtAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCTCCTGATTTTAGCTGCCACCTGTTAGCATTCATGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATaa                                                                                 >  1:23546/1‑143 (MQ=255)                                                                       tctcTAAATAAGATAGTTTGCAGTCGCCGCTTCAGCTTGCGCCCTAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGt                                                                          <  1:174105/143‑1 (MQ=255)                                                                              aTAAGAGAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACtat                                                                   <  1:313757/143‑1 (MQ=38)                                                                                 aGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATc                                                                <  2:365519/143‑1 (MQ=38)                                                                                       tttGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCTTTTTTTTCTCCCCAAAAAAACAATGTTTATATACGAACTTTAAGACCACCCAAGCTAAAAATTGTCAACTATATCatatat                                                          >  1:558610/1‑143 (MQ=11)                                                                                        ttGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGAGTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGCTTATCTACGAACTTTAAGAACACCGACGATAAACATTGTCAACTATATCAtatata                                                         >  2:319305/1‑143 (MQ=11)                                                                                                 ccGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTAc                                                <  1:101049/143‑1 (MQ=38)                                                                                                   gCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTa                                              >  2:733008/1‑143 (MQ=37)                                                                                                         gCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACATGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTAATTCGa                                        >  2:676726/1‑143 (MQ=21)                                                                                                           ctGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTAATTCGAgg                                      <  1:477490/142‑1 (MQ=25)                                                                                                              cgcCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTTGACTATATCATATATAACACATTACTAATTCGAGGCta                                   >  1:689475/1‑143 (MQ=25)                                                                                                                 cATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTAATTCGAGGCTatat                                <  1:746338/143‑1 (MQ=35)                                                                                                                       ccGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTAATTCGAGGCTATATGAACAg                          <  1:679378/143‑1 (MQ=35)                                                                                                                             gATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTAATTCGAGGCTATATGAACAGCATACt                    >  2:597200/1‑143 (MQ=34)                                                                                                                                        ccACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCACGATAAAAATTGTCAACTATATCATATATAACACATTACTAACTCGAGGCTATATGAACAGCATACTGATAATCACAt         >  2:673593/1‑143 (MQ=14)                                                                                                                                        atcttctttAGCATGCTTGTATAACTTAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTAATTCGAGGCTATATGAACAGCATACTGATAATCACAt         <  2:739061/136‑1 (MQ=11)                                                                                                                                            cTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTAATTCGATGCTATATGAACAGCATACTGATAATCACAtctcc     >  2:307562/1‑142 (MQ=25)                                                                                                                                               ttAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTAATTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCCt  <  2:19789/143‑1 (MQ=38)                                                                                                                                               |                                                                                                                                               ACCTTGATATTTTTCTTTTTCAGATAAAAACTGTTATCTATGTATACTTTTAAACCCAATCCGTGTAGAGTCTCTACATAAGATAGTTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTAATTCGAGGCTATATGAACAGCATACTGATAATCACATCTCTCCT  >  NC_000913/1632637‑1632921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.