| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 568,268 | IS1 (–) +9 bp | intergenic (+21/‑39) | renD → / → emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 30 (0.750) | 26/284 | 0.5 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 568268 = | 0 (0.000) | intergenic (+21/‑47) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 568276 | 0 (0.000) | 26 (0.650) | 24/282 | 0.7 | 100% | intergenic (+29/‑39) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | = 1050545 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
TACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGC > NC_000913/568127‑568408 | tACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCa > 1:134685/1‑143 (MQ=255)cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactgcagttccacattaacaccatcatacactaaatcagtaagttggcagcatcaccCa > 1:689671‑M2/142‑143 (MQ=255) gctgatgtccggcggtgctgttgcccgtacgcacccccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactgaagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCaa < 1:156094‑M2/3‑1 (MQ=255) ctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCaaa < 1:131038‑M2/4‑1 (MQ=255) ctgatgcccggcggtgcttttgacgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaagcagtaagttggcagcatcaccCaaa < 2:612574‑M2/4‑1 (MQ=255) tgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactacatcagtaagttggcagcatcaccCAAAc > 1:130124‑M2/139‑143 (MQ=255) cAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGGGTTCAAAc > 1:293151/1‑143 (MQ=255) gatgtccggcggtgcttgtgccgtgacgcaccaccccggcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACt < 1:133962‑M2/6‑1 (MQ=255) gtccggcggtgcttgtgccgctacgcaccaccccgtcagtagctgaacaggagtgacagctgatcgaaccgggagccactggagcccctcaaaaacaccatcatacaccaaatcagtaagttggcagcatcaccCAAACTgta < 2:217495‑M2/9‑1 (MQ=255) gataatggGGAGGAAAGGTGAGTACGAATTTGAGTTTTAAGGAGTGTCGGCAGAGTGCCGCGATGAAACGGGTATTGAGTGTATATAAAAGAACATCAATGGGGACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAg < 2:56550‑M1/140‑2 (MQ=255) agaaTGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGCGTTGAAACTGTAgg > 1:215594‑M1/1‑141 (MQ=255) gcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatccactaaatcagtaagttggcagcatcaccCAAACTGTAGTACa > 2:219432‑M2/130‑143 (MQ=255) aaggaaAGGTGAGCACGAATCTGATTTTGAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgact < 1:459537‑M1/143‑11 (MQ=255) ggaaAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCCCCCGGCCGGCAGGTTGAGACGGGTATGGAGGGTATCTAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGGGTTCAAGCTGTAggtaatgactcc > 2:518246‑M1/1‑131 (MQ=255) tttgccgctactcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATtctctc < 2:178966‑M2/22‑1 (MQ=255) ttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTg > 1:723731‑M2/115‑143 (MQ=255) gAGCACGGATCGGATTGTGAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttatt < 2:287975‑M1/143‑21 (MQ=255) gAGCACGAATCTGGTTTTTAAGGAGGGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTGCAAACTGTAggtaatgactccaacttatt < 1:358869‑M1/143‑21 (MQ=255) gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGACCa > 1:216340‑M2/111‑143 (MQ=255) aCGAATCTGATTTTTAAGGAGTGTCTCCAGAGTGCCGCGATGAAACGGGTATTGAGTGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgata < 2:55226‑M1/143‑25 (MQ=255) accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAgg > 1:394561‑M2/109‑143 (MQ=255) accgcgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacagtaaatcagtaagttggcagcattaagCATACTGTAGTACAATTCTCTCCAGTTTGAACAGGaaa < 2:635334‑M2/38‑1 (MQ=255) accccgtcagtcgccggacagtagggacagctgtagcagacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAACTGTACTACAATTCTCTCCAGTTTGAACAGGaaa > 2:157009‑M2/106‑143 (MQ=255) accccgtcagtagctgaacaggatggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGaaa < 1:85424‑M2/38‑1 (MQ=255) cTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAATTCAAACTGTAtgtaatgactccaacttattgatagtgttt < 2:635312‑M1/143‑31 (MQ=255) tGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgtttt < 1:487817‑M1/143‑32 (MQ=255) gATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGGGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgtttta > 1:130478‑M1/1‑111 (MQ=255) tttttAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaccttattgctagtgttttatg > 1:421249‑M1/1‑109 (MQ=255) gtCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttatggatagtgttttatgttcagataatgc < 2:221556‑M1/143‑47 (MQ=255) gacagAGTGCCGCGATGAAAGGGGTATTGACGGTATATAATAGAACATCAATAGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaagccgtccaacatattgatagtgttttatgttcagataatgcccg < 2:518669‑M1/141‑50 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTa > 1:79128‑M2/80‑143 (MQ=255) ccGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgaagacttta > 2:644899‑M1/1‑85 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTtg > 1:322721‑M2/75‑143 (MQ=255) tGAAACGGTTATTGAGGGTAGATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgacgccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc < 2:721853‑M1/143‑65 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTCTCTTGgtggtg > 1:194492‑M2/69‑143 (MQ=255) acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATCGTTATCTTGGTGGTTCa > 1:466326‑M2/67‑143 (MQ=255) aCGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagct > 1:519219‑M1/1‑75 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATCTGCTATGAACCCTTATCTTTGTCTTGGTGGTACAATa > 2:484086‑M2/64‑143 (MQ=255) tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCaga < 1:403300‑M2/88‑1 (MQ=255) ctcaaaagcaccatcatacacgagagcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTg < 1:285052‑M2/96‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTg < 1:315479‑M2/84‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTg > 2:315479‑M2/47‑130 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTAc > 1:665649‑M2/44‑143 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTAc > 2:403995‑M2/44‑143 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTGGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTa > 1:272708‑M2/37‑143 (MQ=255) tacactaaatcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGaa < 1:591287‑M2/112‑1 (MQ=255) cttcgtgatgaaacagGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc < 1:488229‑M1/138‑107 (MQ=255) aaTGATGAAACAGGTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt > 1:166762‑M1/1‑34 (MQ=255) tcagtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTCATGAAGTTTTCAGa > 2:466251‑M2/23‑143 (MQ=255) gtaagttggcagcatcaccCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGttttcatacgg > 2:29504‑M2/20‑138 (MQ=255) actggtgaggtgagttCCAACGGTAggtaatgactccaacttattgatagtgtgttatgttcagataatgcccgaggactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgc < 1:215763‑M1/140‑119 (MQ=255) gTGAGTTGAGTTCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgcttttgcgaacgacagcgacttccgtcccagccgtccccggtgctgcc > 2:433077‑M1/1‑21 (MQ=255) gagttgggttCATACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc < 2:77141‑M1/143‑125 (MQ=255) ttCAAACTGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccccgccgtgccaggtgctgcctcagatccag > 1:390276‑M1/1‑11 (MQ=255) | TACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGC > NC_000913/568127‑568408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |