mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.1% | 98.7 / 47.4 | 85 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 382211 | NA (NA) | 5 (0.130) | 4/274 | 4.9 | NA | noncoding (952/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382218 | NA (NA) | noncoding (959/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4218434 | NA (NA) | 3 (0.080) | 3/268 | 5.3 | NA | intergenic (+21/‑162) | aceA/aceK | isocitrate lyase/isocitrate dehydrogenase kinase/phosphatase |
| ? | NC_000913 | = 4218520 | NA (NA) | noncoding (36/36 nt) | other | REP311b | |||||
| * | ? | NC_000913 | = 3227830 | 21 (0.520) | 3 (0.080) | 3/268 | 5.3 | 12.8% | coding (30/1071 nt) | ygjJ | protein YgjJ |
| ? | NC_000913 | = 3227835 | 21 (0.560) | coding (35/1071 nt) | ygjJ | protein YgjJ | |||||
| * | ? | NC_000913 | 4400978 = | 59 (1.470) | 3 (0.080) | 3/272 | 5.4 | 4.9% | coding (307/1281 nt) | hflX | ribosome rescue factor HflX |
| ? | NC_000913 | 4401085 = | 60 (1.560) | coding (414/1281 nt) | hflX | ribosome rescue factor HflX | |||||
| * | ? | NC_000913 | = 3076701 | 36 (0.900) | 3 (0.080) | 3/270 | 5.4 | 8.8% | coding (756/1278 nt) | yggP | putative zinc‑binding dehydrogenase YggP |
| ? | NC_000913 | = 3076718 | 28 (0.740) | coding (739/1278 nt) | yggP | putative zinc‑binding dehydrogenase YggP | |||||
| * | ? | NC_000913 | = 2691525 | 34 (0.850) | 5 (0.130) | 3/270 | 5.4 | 13.3% | intergenic (‑185/+131) | glmY/purL | small regulatory RNA GlmY/phosphoribosylformylglycinamide synthetase |
| ? | NC_000913 | = 2691531 | 33 (0.870) | intergenic (‑191/+125) | glmY/purL | small regulatory RNA GlmY/phosphoribosylformylglycinamide synthetase | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 3 (0.080) | 3/270 | 5.4 | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4195840 = | 25 (0.620) | 3 (0.080) | 3/276 | 5.5 | 11.1% | coding (260/1896 nt) | thiC | phosphomethylpyrimidine synthase |
| ? | NC_000913 | 4195862 = | 24 (0.620) | coding (238/1896 nt) | thiC | phosphomethylpyrimidine synthase | |||||
| * | ? | NC_000913 | = 4171803 | 40 (1.000) | 8 (0.200) | 3/280 | 5.5 | 11.5% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase |
| ? | NC_000913 | = 4213162 | 84 (2.130) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA/stress response protein | |||||
| * | ? | NC_000913 | = 4040683 | 67 (1.670) | 8 (0.200) | 3/280 | 5.5 | 9.6% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein |
| ? | NC_000913 | = 4213162 | 84 (2.130) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA/stress response protein | |||||