Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,560,455:1 +G 100% pseudogene (151/758 nt) glpR ← DNA‑binding transcriptional repressor GlpR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,560,4551.G100.0% 117.0 / NA 38pseudogene (151/758 nt)glpRDNA‑binding transcriptional repressor GlpR
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (24/14);  total (24/14)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA  >  NC_000913/3560316‑3560588
                                                                                                                                            |                                                                                                                                      
gATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGcgca                                                                                                                                      >  1:385490/1‑140 (MQ=255)
 aTAAACGGGGTCGGGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGcgcag                                                                                                                                     <  2:74000/143‑5 (MQ=255)
      cAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGATGGCGCAGGAGCa                                                                                                                                >  2:412394/1‑143 (MQ=255)
          gTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTGTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGtt                                                                                                                            <  1:157904/143‑1 (MQ=255)
           tCGAGCCAGGGGGGGTTTGCTCTGCCACTTTGCGGGTGATGCGCGCTTTGTCTTCGGTCAGGGTGGCCTTGCGAGCGTGGCACGGCGGTGTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGttt                                                                                                                           <  2:605302/143‑1 (MQ=255)
               gCCAGTGGGGAGTTGCTCCGCCACGTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCt                                                                                                                       <  1:432611/143‑1 (MQ=255)
                 cATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCGCCGCCGTGGTGGCGCAGGACCAGGTTGTGGTcc                                                                                                                     >  2:707294/1‑143 (MQ=255)
                   ttGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTGTTGCTTAGCTCTGGGTGGCCTTGCGATCGTCCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATCATCCCGCAGGACCAGGTTTTGCTCCGc                                                                                                                   >  2:149633/1‑143 (MQ=255)
                     ggggCTTGGCTCAGCCACTTTGCGGGGGATGCGCTCTTTTTCGTCGGTCTGGGTGGCCTCGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCa                                                                                                                 <  2:526318/143‑1 (MQ=255)
                          tcggCTGCGCCACTTTGCGGGCGATGCGCTCTTTTTCTGCGGGCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCa                                                                                                            <  2:336566/140‑1 (MQ=255)
                              ccgcgccgcGTTGGGGGCGGCGCGAGCTTTTTCTCCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGGGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGa                                                                                                        <  2:813898/140‑1 (MQ=255)
                               tCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGAGCAGGTTTTGCTCCGCCAGCTCTTTGAg                                                                                                       >  1:271834/1‑143 (MQ=255)
                                                   gcgcTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGCTGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCg                                                                                  >  1:322161/1‑143 (MQ=255)
                                                        ctTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCACTGGGGTCGCGGCG‑AATGGTCTGCGGGCTg                                                                             >  1:114158/1‑143 (MQ=255)
                                                         tttttCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAGCTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCGCGTTGAGGTCGCGGCG‑AATAGTCTGCGGGcggg                                                                            >  2:801754/1‑140 (MQ=255)
                                                         tttttCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGTAGGCAGCGCCGCACCGCCATGATGGCGCAGGATGAGGTTTTGCTCCGACAGCTCATTGAACTCCCGACG‑AGTCATCTGCAGGCTGa                                                                            >  2:238817/1‑143 (MQ=255)
                                                               ttcGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGTGGTCGCGGCG‑AATAGTGTGCGGGCTGACGgaga                                                                      >  1:387284/1‑143 (MQ=255)
                                                               ttcGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGgaga                                                                      >  1:352163/1‑143 (MQ=255)
                                                               ttcGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGACG‑AATAGTCTGCGGGCAGACGgcga                                                                      >  2:615340/1‑143 (MQ=255)
                                                                tcGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGACGGCAGCGCCGCCCCGCCATGATGGCGCAGGCTCAGGTTTTGCTCCGCCAGCTCATTCAGGTCGCGGCG‑AATAGCCTGCGGGCTGACGGAGaa                                                                     >  2:246157/1‑143 (MQ=255)
                                                                  ggTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTGTTGCACCGCCAGCTCATTGAGGACGCGGCG‑AATAGTCTGCGGGCAGACGGAGACAt                                                                   >  2:238461/1‑143 (MQ=255)
                                                                      tGGGTGGCCTTGCGATCGTGCCACGGCGTGTTGACCGAACTGGACGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGctc                                                               <  2:476181/143‑1 (MQ=255)
                                                                               ttGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGACAAATGCTCTACCAGcca                                                      >  2:550629/1‑141 (MQ=255)
                                                                                  cGATCGTGCCACGGCGTGTTAACCGAACTGGAGGGCAGCGCCGCAGCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTc                                                   <  2:410978/143‑1 (MQ=255)
                                                                                       gTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAc                                              >  1:769624/1‑143 (MQ=255)
                                                                                              ggCGTGGTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGTTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATa                                       <  1:791867/143‑1 (MQ=255)
                                                                                               gCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCGGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATaa                                      >  1:537540/1‑143 (MQ=255)
                                                                                                 gtgtTAGCCGAGGGGGGAGGCAGCGCCGCACCGACATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAAcc                                    <  2:66570/143‑1 (MQ=255)
                                                                                                    ttAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGACATGCTCTACCAGCTCTTCGGTACTGACATAACCctg                                 <  1:571178/143‑1 (MQ=255)
                                                                                                       aCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCCCATTGACGACGCGGCG‑ACTACTCAGCAGGCTGACGGAGAGATGCTCTAACAGCTCTTCGGTACTAACAAAACCctgccg                              >  2:260704/1‑141 (MQ=255)
                                                                                                       aCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGCACGATCAGGTTTTGCTCCGCCAGCTCATAGCGGTCGCGGCG‑AATAGTCTGCGGGCCGACGGAGAAAAACTCGACCAGCACTCAGGAACAGACAAAACCctgctg                              >  2:24562/1‑143 (MQ=255)
                                                                                                            aCTGGAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGACGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTGCCAGCTCTTCGGACCAGACATAACCcggccgactac                         >  2:324193/1‑136 (MQ=255)
                                                                                                               ggAAGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCa                      <  1:620150/143‑1 (MQ=255)
                                                                                                                  aGGGAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt                   <  2:37630/143‑1 (MQ=255)
                                                                                                                  aGGCAGCGCCGCACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt                   >  1:538229/1‑143 (MQ=255)
                                                                                                                        cgccgcACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGGTTAACCAGTTCGataa             >  2:508360/1‑143 (MQ=255)
                                                                                                                            gcACCGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGGTAATAcc         >  1:887299/1‑143 (MQ=255)
                                                                                                                               ccGCCATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATCGTGTACGAATTTTCTGAAATATGATAAAATTGCTCTTCGTTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGtt      <  1:649298/143‑1 (MQ=255)
                                                                                                                                cGCCATGATGGCGCAGGATCAAGTTTTGGTCCGCCAGCTCATTGAGGTCGGAGTGCGATAG‑CTGTTGGGTGGCGGTGGAATGCCCTACCAGCTCTTCGGTACTGACGTGACCCTGCTTGTTAGCCAGTCCGATAATACCgcgg     >  2:865646/1‑140 (MQ=255)
                                                                                                                                   cATGATGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTGACCAGTTCGATAGTACCGTTGTGa  >  1:302405/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                      
GATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCG‑AATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGA  >  NC_000913/3560316‑3560588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑