New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2729630 =	NA (NA)	9 (0.210)	6/254	NT	NA	noncoding (1528/1542 nt)	rrsG	16S ribosomal RNA
	?	NC_000913	2729652 =	NA (NA)					noncoding (1506/1542 nt)	rrsG	16S ribosomal RNA

TTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC  >  NC_000913/2729494‑2729704                                                                                                                                         |                                                                            tttCCTTAATAGAAAGCGAACGGCCTTATGCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTCTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCa                                                                      <  2:463895/143‑1 (MQ=255)         aTAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTcccc                                                              <  1:683691/143‑1 (MQ=40)         aTAGAAAGCGAACGCCCGTATGCTCTTCAGCCTCACTCCCAACGCGTAGACGCCTTGCTATTCACTTTTCTTCGGACAATCGGTGTTAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGCGATCCAA‑CCGCAGGTTcccc                                                              <  2:159716/143‑1 (MQ=14)             aaaGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGGTCCCCTACg                                                          >  2:518244/1‑143 (MQ=255)              aaGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTACTATTCACTTTTCATCAGACAAGCTGTGTTACCACTGCAAAGTACGCCTCCTTACGGTAAGGAGGCGATCCCA‑CCGCAGGTTCCCCTCCgg                                                         >  2:308824/1‑143 (MQ=14)                  gAACGGCCTTATTCTCTTCAGCCTCACTCCCACCGCGTAAACGCCTTGCTATGCACTTTCCATCAGACAATCTGTGTAAGCACAGCAAAGAACCCCTCTTTAAGGAAAGGA‑GAGGTCCAACCCGCACCTCCCCCTACGGTTAc                                                     >  2:464115/1‑143 (MQ=11)                  gAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAG‑CCGCAGGTTCTCCTACGCTTAc                                                     >  1:643301/1‑143 (MQ=255)                  gAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTAc                                                     <  1:20627/143‑1 (MQ=255)                          ttATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTACGGAGGTGATCCAA‑CCGCAGGTTCCGCTACGGATACCTTGCTAc                                             >  2:30967/1‑143 (MQ=255)                              tctcTTCAGCCTCACTCTCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTACGGAGGGGATCCAA‑CCGCAGGTTCCCCTACGGTTACATTGTTCCGACt                                         >  1:612844/1‑143 (MQ=14)                               ctctTCAGCCTCACGCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACGATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGCTCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTCCGACtt                                        <  2:724958/143‑1 (MQ=255)                                tctTCAGCCTCACTCCCTACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTc                                       <  1:705359/143‑1 (MQ=255)                                tctTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGCCTTc                                       >  2:248767/1‑143 (MQ=255)                                 attCAGCTTCACTCCCACCGCGTAGACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGGGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCa                                      <  2:705775/142‑1 (MQ=255)                                             tCCTAACGCGGAAACGCCTTGCTATTCACGTTTCGTCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGa                          <  2:708751/143‑1 (MQ=255)                                                        aaaCGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTg               <  1:824870/143‑1 (MQ=255)                                                         aaCGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTgg              >  2:123863/1‑143 (MQ=255)                                                            ggcTTGCTATTCAGTCTTGATCAGACGTTCGGTGTGAGCACTGCAGAGTACGCTTCTTTGAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTaa           <  1:823478/141‑1 (MQ=11)                                                              cTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACGCCAGTCATGAATCACAAAGTGGTAAgc         >  2:235778/1‑143 (MQ=255)                                                              cTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAgc         >  2:445801/1‑143 (MQ=39)                                                               ttGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGGCATGAATCACAAGGTGGTAAgcg        >  1:650678/1‑143 (MQ=255)                                                                     ttCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAGAGCGGTAAGCGCCCTcc  >  2:424831/1‑143 (MQ=18)                                                                                                                                         |                                                                            TTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAA‑CCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC  >  NC_000913/2729494‑2729704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.