| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,790,303 | A→T | 5.5% | intergenic (‑222/+17) | waaH ← / ← tdh | UDP‑glucuronate:LPS(HepIII) glycosyltransferase/threonine dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,790,303 | 0 | A | T | 5.5% | 312.8 / 9.2 | 111 | intergenic (‑222/+17) | waaH/tdh | UDP‑glucuronate:LPS(HepIII) glycosyltransferase/threonine dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (52/52); new base T (3/3); total (55/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-02 | |||||||||||
Only 100 of 113 total aligned reads displayed.
TTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAGACTGAATCA > NC_000913/3790161‑3790444 | tttttACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCGGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATCTT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATa > 1:438215/1‑143 (MQ=255)tttttACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATGTTACATATT‑TAACAGAT‑‑TATTCTCAGATAAAAGGGCTGGAATa > 1:14114/1‑143 (MQ=255) tcttACCGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATAc < 1:277239/141‑1 (MQ=255) tttACAGGTGAGAGAGTCACTTCAGGGTCGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑CATCCTCAGATAAAAGGGGTGGAATAcc > 1:175844/1‑143 (MQ=255) tACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAAAAAAA‑‑TATCCTCAGATAAAAGGGCTGGAATACCAg > 1:464508/1‑143 (MQ=255) tACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGAACAGAGTTGACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAg > 1:643965/1‑143 (MQ=255) aGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TGTTTATGTCCCTGACAGCATTTTAAAAATTATAATTG‑T‑‑TATCCTCAGTGCGAAGATCGGGAATACCAGccc > 1:641047/1‑143 (MQ=255) aGGTGAGAGAGGCACTTCAGTGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGTATTCCAGccc < 2:202467/143‑1 (MQ=255) gTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATGAAAGAGCTGGAATACCAGcgatt > 2:202641/1‑139 (MQ=255) gTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTCGCAGGAATTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCtt > 2:308306/1‑143 (MQ=255) tGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAGAAGGGCTGGAATAGCAGCCCTTg > 2:6472/1‑143 (MQ=255) tGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTg > 1:550392/1‑143 (MQ=255) gagagaGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTCTACATATT‑TAACAGAT‑‑TATCCTCAGATGAAGGGGCTGGAATACCAGCCCTTGt > 2:445418/1‑143 (MQ=255) gagagaGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGAATATACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGt > 1:77168/1‑143 (MQ=255) gagagaGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAA‑GCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGt > 2:175771/1‑143 (MQ=255) agagagTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCCGATAAAAGGTCTGGAATACCAGACCATgat > 1:294426/1‑141 (MQ=255) gagagTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGTATTCCAGCCCttttat < 2:334212/143‑5 (MQ=255) gagagTCACTTAAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGTATTCCAGCCCttttat < 2:410916/143‑5 (MQ=255) gattCACTTCATGGTAGAGAGTTAATGAGAGTAGCTATATATTAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGAGTTGACATATG‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCgt < 1:300994/140‑1 (MQ=255) gagTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATTATATTTCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGAGTTGACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCgt < 1:301145/143‑1 (MQ=255) gagTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGATATCTGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCgt < 1:829968/143‑1 (MQ=255) aCTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTaa > 1:339955/1‑143 (MQ=255) cTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAAt < 2:680828/143‑1 (MQ=255) ttCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATc > 2:620447/1‑143 (MQ=255) ttCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATc < 1:744318/143‑1 (MQ=255) ttCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATACTCAGATAAAAGGCCTGGAATACCACCCCTTGCACGTGTTAATc > 2:711895/1‑143 (MQ=255) tCAGGGTAGAGAGATTATTACATCAGCTCTATAATAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACTGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATcc < 2:35184/143‑1 (MQ=255) ggTAGAGAGATAAGGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGc < 2:216432/143‑1 (MQ=255) agcaagaTAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCa < 1:276843/139‑1 (MQ=255) agagggAGAATGCGAGCAGCTATATGAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCa < 2:74210/143‑1 (MQ=255) agaTAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCGCAGAAt > 1:126855/1‑143 (MQ=255) gaTAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATa > 1:134754/1‑143 (MQ=255) aTAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATaa > 1:58728/1‑143 (MQ=255) aTAATGAGAGCAGCTATAGAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACACGATTTTACAGATG‑TAACAGAT‑‑TATCCTCAGATAATAGGGCTGGAATACCAGCCCTTGTTCGTGTTAAGCCCAGCTCAGAATaa < 1:137222/143‑1 (MQ=255) tGAGAGCAGCTATATAAGAGATCAGCACAATTAAGAAC‑TCTTTATTACACTGACAGGATTTTGCATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACAAGCCCTTGTTCGGGTTAATCCAAGCTCAGAATAACttg > 2:584968/1‑142 (MQ=255) gagaGCAGCTATATAAGAGATCAGCACAATTACGTACTTCTTTA‑GACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTc < 2:861400/143‑1 (MQ=255) agcagcTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGTCGGGATTTTACCTACT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCg < 1:240090/143‑1 (MQ=255) agcagcTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACAATGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAACGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCg > 2:410790/1‑143 (MQ=255) cagcTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGa < 1:478978/143‑1 (MQ=255) cagcTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGa < 2:187052/143‑1 (MQ=255) agagATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGCTTCTATGGTC‑GGTTAATGGG‑TGGAGTCTGATCGCTCGTTCGTTTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGaa < 1:649858/143‑1 (MQ=255) agagATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTACTCCCAGCTCAGAATAACTTCCCCGGACTGGCCCGac > 2:562627/1‑142 (MQ=255) gagaTCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAAc < 1:379317/143‑1 (MQ=255) aTCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGGCTGGCCCGAACGCa > 1:761106/1‑143 (MQ=255) cacaATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCg < 1:568838/143‑1 (MQ=255) acaATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTGAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGt < 2:769567/143‑1 (MQ=255) caATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTc < 1:163362/143‑1 (MQ=255) ttgcGAAC‑CCTTTATTACACTTACATGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTTTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCaaa < 2:581902/140‑1 (MQ=255) ttACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCaaa < 1:276221/143‑1 (MQ=255) ttACGAAC‑TCGTTATTACACTGGCGGGATTTTAGATATT‑TGACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATATCGtgaga < 2:828158/143‑5 (MQ=255) cGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCGGCCCTTGTTCGTGTTAATCCCAGCTCAGGATAACTTTCCCGGGCTGGCCCGAACGCATAGCGGCAAAGcc > 1:711020/1‑143 (MQ=255) gAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGccc < 2:339955/143‑1 (MQ=255) gAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGccc > 1:711109/1‑143 (MQ=255) gAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGccc < 2:757409/143‑1 (MQ=255) tctTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCt < 2:171461/143‑1 (MQ=255) taCACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCGTTGTACATGTTAGTCTTTGATAAACGATATTGTCTCTTACTGGCCCGAACGCATAGCGTCAGAGCCGTCCTGGaaacg > 2:864592/1‑141 (MQ=255) taCACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCCAAGCCCTTCTGGAAatc > 1:95266/1‑143 (MQ=255) cacTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAatcat > 1:711200/1‑143 (MQ=255) acTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCATATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTCTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAatcatc < 2:53686/143‑1 (MQ=255) aCAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATa > 1:104309/1‑143 (MQ=255) cAGGATTTTACATCTT‑TAACAGCT‑‑TACCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATag < 1:132072/143‑1 (MQ=255) cAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATag > 1:662118/1‑143 (MQ=255) cAGGATTGTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTGTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATag < 1:338682/143‑1 (MQ=255) aGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATaga < 2:746712/143‑1 (MQ=255) ggATTTCACGTATT‑CGACAGCT‑‑TGTCCTCCGACAAAAGGGCTGGCATACCCGCCCTTGTTCGTGTTAACCCCAGCTCATAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATagag < 2:592573/143‑1 (MQ=255) gATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATGgaga > 1:664899/1‑143 (MQ=255) ttttACATATT‑TAACCGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGaaa < 2:114088/143‑1 (MQ=255) ttttACATATT‑GAACAGAT‑‑TATCCTGAGATAAAACGGCTGGAATACCAGCCCTTGTTCGGGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGaaa < 2:853304/143‑1 (MQ=255) tACATATT‑TAACAGAT‑‑TTTCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGa < 2:273207/143‑1 (MQ=255) tACATATT‑TAACAGAT‑‑TATCTTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGa < 2:736824/143‑1 (MQ=255) tACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGa < 1:141854/143‑1 (MQ=255) aCATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGAt < 1:715184/143‑1 (MQ=255) atatT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCACAGCTTTACTCAATGGGTTAGCGTCAAACCCCTTCTGGAAATCATCGATAGAGAAACGATgg > 1:881241/1‑143 (MQ=255) tatT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAGGGTCGGCTGGAACTCATCGATAGAGAAACGATggg > 2:53632/1‑143 (MQ=255) atT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGt > 1:396234/1‑143 (MQ=255) atT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTACTGGAAATCATCGATAGCGGAACGCCGGGt > 2:425382/1‑143 (MQ=255) agt‑tAACAGAT‑‑TATCCTCGGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGt < 1:271694/141‑1 (MQ=255) tt‑tAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAGCGCCTAGCGTCAAAGCCCTTCTGGAAATCATCGATAGCGAAGCGATGGGTa > 1:428083/1‑143 (MQ=255) cAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCATGCCTTGTTCCTGTCAATCCCAGCTCAGAATAACTTTCTCGCACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGAt < 2:764735/143‑1 (MQ=255) cAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGGTGGGTAACGAt > 2:335795/1‑143 (MQ=255) aGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCCAAGCCCTTCTGGAAATCATCGTTAGAGCAACGATGGCTATTGAtg > 1:15179/1‑142 (MQ=255) aGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATc > 1:730355/1‑143 (MQ=255) aTCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCCTCTGGAAATCATCGCTAGAGAAACGATGGGTAATGATCGGCgc > 1:354502/1‑142 (MQ=255) cTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAACCGACGGGTAATGATCGGCGAAAg > 2:638277/1‑143 (MQ=255) cTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCACTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATGGGCGaacg > 2:491642/1‑141 (MQ=255) aTAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGa < 2:378982/143‑1 (MQ=255) aTAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCGCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGa < 2:399570/143‑1 (MQ=255) aaGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGcc < 1:591092/143‑1 (MQ=255) aaGGGCGGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCAGAGCGTCAAAGCCCTTCTGGAAATCATCGAGAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGcc < 2:330700/143‑1 (MQ=255) aGGGCTGGTATTCCAGCCCTTGTTCGTGTCAATCCCAGCTCAGAATAACTTTCCCGGACTGGCACGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCa > 2:682276/1‑143 (MQ=255) aGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCa > 2:122794/1‑143 (MQ=255) gggCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAg < 2:203167/143‑1 (MQ=255) ggCCGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCAGACCGTCAAAGCCCTTCTCGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAGa < 1:408220/143‑1 (MQ=255) cTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAGACt < 1:267614/143‑1 (MQ=255) cTGGAATACCAGCCCTTGTGCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGTCTGGCCCGAATGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAGACt < 2:200027/143‑1 (MQ=255) tGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGGTCGGCGAAAGATCGCAGCCAGACTg > 1:413423/1‑143 (MQ=255) ggAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGGAATCATCGAGAGAGAAACGATGGGTAATATGCGACGAAAGAACAAGGCCAGAcgca > 2:310234/1‑140 (MQ=255) gAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAGACTGaa < 2:583475/143‑1 (MQ=255) aaTACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACGTTCCCGGACTGGCCCGACCGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAGACTGAAt < 1:715907/143‑1 (MQ=255) tACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAGACTGAATCa < 1:432526/143‑1 (MQ=255) | TTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAAC‑TCTTTATTACACTGACAGGATTTTACATATT‑TAACAGAT‑‑TATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGAACGCATAGCGTCAAAGCCCTTCTGGAAATCATCGATAGAGAAACGATGGGTAATGATCGGCGAAAGATCGAGGCCAGACTGAATCA > NC_000913/3790161‑3790444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |