New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3895233 | 51 (1.930) | 3 (0.120) | 3/240 | NT | 5.8% | intergenic (+15/+39) | yieF/adeP | chromate reductase/adenine:H(+) symporter |
? | NC_000913 | = 3895244 | 51 (2.120) | intergenic (+26/+28) | yieF/adeP | chromate reductase/adenine:H(+) symporter |
ATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAG > NC_000913/3895105‑3895383 | aTTCAGAACAAAGTTGAGCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCAtgg > 1:454968‑M2/1‑140 (MQ=255) ttCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCCCCTGCCCCGGCAATTGACTGCATTTGGCAAGATAATTCAGAGAATTAAGAGCAAAATAAAAAAACAGCCAGCAATCATGCGTGGc > 1:45984/1‑143 (MQ=255) tCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCACTCATGCAtggcg < 1:476655‑M2/143‑6 (MQ=255) gtactaaGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGt < 1:133226/138‑1 (MQ=255) aaCAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCAtggcgggtt < 1:201009‑M2/143‑10 (MQ=255) aGTTGATCGGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTaa < 1:163562/143‑1 (MQ=255) tGATTCGCAACCCGGAGATGTGATTGATCAGGGTAGGCTGGACTACCTGACCGTGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAAcgc < 2:32627/143‑1 (MQ=255) ccGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTa > 1:456499/1‑143 (MQ=255) cGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGGCCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTAt > 1:334872/1‑143 (MQ=255) agcgaaCCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGCCCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGAGCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTAt < 2:98304/139‑1 (MQ=255) aaGTGAGTGAGCAGGGTACGGTGGACCACCGGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGa < 2:53875/143‑1 (MQ=255) gTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTgcgc > 1:409981/1‑143 (MQ=255) gTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGGTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTACCGCGCTATCGAGTTTAGTGAGc > 1:460247/1‑143 (MQ=255) agcAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATa < 2:517407/141‑1 (MQ=255) agtgTACCCTGCACTACCTAACCGGGCAATTGACCGCATTTCGTAGGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATAATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAg < 2:343933/140‑1 (MQ=255) gagTACGCTGGACGACCGGGCCGGGCAATCGACCGCATGTGGTGAGTTGATTCAGCGAGTGAAGATCTGAATAAAAAACCCGCCAGCCATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGa < 1:147034/141‑1 (MQ=255) cTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCtt > 2:110056/1‑143 (MQ=255) ggctcactTGACCGGGCAATTGACCGCATGTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCa < 2:35168/139‑1 (MQ=255) ggACCACCTGAACGGGCAATGGACCGCATTCGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCa < 1:69717/143‑1 (MQ=255) gACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAg < 2:349204/143‑1 (MQ=255) gACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAg < 1:47597/143‑1 (MQ=255) ccTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGATCGTCGATAAAGACAATCTTCAGGATaa > 2:37491/1‑143 (MQ=255) cTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATaaa > 2:462165/1‑143 (MQ=255) tGACCGGGCGATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGAGAGCGTCGATAAAGACAATCTTCAGGATAAAc < 2:393675/143‑1 (MQ=255) tGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAc < 1:471634/143‑1 (MQ=255) aCCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATGTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAcag < 2:195595/143‑1 (MQ=255) aCCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGACTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAcag > 2:317803/1‑143 (MQ=255) ccggcgaaTTGACCGCATTTGGTGAGTTTATTCAGCGAGTGAAGATCTAAATAAAAAGCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAcagc < 1:46077/137‑1 (MQ=255) ctggCAATTGACCGCATTTGGTGAGTTTACTCAGCGAGTTAAGATCTAAATAAAACACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAcagca < 2:288062/141‑1 (MQ=255) cGGGCATTTGACCCACTTCGGTGAGTTGATTCAGCGATTTAAGATCGAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAcagca < 2:207281/143‑1 (MQ=255) cGGGCAATTGACCGCATTTGGAGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAAACAAGCATAGCGGGTTTTAAACGCGCAAACGATTATAGAGAACATCGATAAACACAAACATCAGAACAAAccgca > 2:256681/1‑143 (MQ=255) ggCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACagcagc > 2:41784/1‑143 (MQ=255) aaTTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCTATAAAGACAATCTTCAGGATAAACAGCAGCCCa > 1:134281/1‑143 (MQ=255) ttGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAAc > 1:107376/1‑143 (MQ=255) aCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGAGTAGCTGAAGACAATCTTCAGGATAAACAGCAGCGCAACgat > 2:500966/1‑143 (MQ=255) tgtGGTGAGTTTACGCGGCGAGCGAAGATCTGAATAGAGTACCCGCCAGCTATCATGGATGGCGGGTTTTTAACGGGCTATGGATTTTAGTGCGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTAc < 2:161142/141‑1 (MQ=255) tGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTCCGccgg > 1:484835/1‑140 (MQ=255) taGTTTATTCAGCGGTTTAAGATCTAAATAAAAAGCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACgg < 2:444268/142‑1 (MQ=255) gTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGGCAAACTGCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGc > 2:307155/1‑143 (MQ=255) tttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGCTAAACAGCAGCGCCACGATGATTACGCACGGGCt > 2:124100/1‑143 (MQ=255) tttATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATCACGCACGGGCt > 2:447885/1‑143 (MQ=255) tgctcggCGAGTTAAGACCTAAATAAAAACCCCGCGAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTCAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTa < 1:407588/137‑1 (MQ=255) tCAGCGAGTTAAGATCTAAATAAAACACCCGCCCGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGAt < 2:516091/143‑1 (MQ=255) cGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTCGAACGCGCTATCGATTTTAGCGAGCGTCGATAAAGACAATCTTCAGAATAAACAGCAGCGCAACGTGGATGACGACCGGGCTTGGATCACg > 2:162970/1‑143 (MQ=255) ttACGAGCTAAATATACAACCCGCCAGCAACCAGGGATGGCGGGTTTGTAACGCGCTATCGATTTTAGTGAGCGCCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGa < 2:417572/143‑1 (MQ=255) ttAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGa > 1:158167/1‑143 (MQ=255) gATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTc > 2:343653/1‑143 (MQ=255) aTCTAAATAAAAAACCCGCCAGCAATCATGCAtggcgggttttttatttagatcttaactcgctgaataaactcaccaaatgcggtcaattgcccggtcaggtggtccagcgtaccctgatcaatc > 2:215252‑M2/1‑32 (MQ=255) aTCTAAATAAAAAACCCGCCAGCAATCATGCAtggcgggttttttatttagatcttaactcgctgaataaactcaccaaatgcggtcaattgcccggtcaggtggtccagcgtaccctgatcaatc < 1:215252‑M2/126‑95 (MQ=255) taaataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCACCGATGATTACGCACGGGCTCAGATCACGCAGCCTTCCGGt > 2:149679/1‑143 (MQ=255) taaataaaAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGAGAAAGACAATCATCAGGATACACAGCAGCGCAACGAGCAAGACGCACGAGCTTAGATCACCACGACGCCCgga > 2:219816/1‑142 (MQ=255) taaaaaCCCGCCATGCATGATTGCTGGCGGGCTTTTAACGCGCTATCGATCTTAGTGAGCGTCGATAAAGACAATCTCCAGGATAAACAGCAGCGCAACGATGACTACGCCCGGGCATAGATCACGCAGACGCCCGGTACCGa > 2:489306/2‑143 (MQ=255) aaaaCCCGCCAGCAATCATGCAaggcgggttttttatttagatcttaactcgctgaataaactcaccaaatgcggtcaattgcccggtcaggtggtccagcggaccctgatcaaccactactccggggtgcggatcaacttcg < 2:385276‑M2/143‑122 (MQ=255) aaaaCCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGAtt > 2:454365/1‑143 (MQ=255) ccGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGCTTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtcat < 2:107376/143‑1 (MQ=255) ccGCCAGCAATCATGCATGGCGGGTTTTTAACCCCCTATCGAATTTAGTGAGCCTCGATAAAGACAATCTTCAGGATACACAGCAGCGCAACTATGATTACACACTGGCTTAGATCACGCAGACATCCGCGACCGACTTccag > 2:60154/1‑142 (MQ=255) gCCATCAATCAGGGATGGCGGGTTTTAAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtcatca < 2:275229/143‑1 (MQ=255) gCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtcatca > 1:95704/1‑143 (MQ=255) gCAATCATGCATGTCGGGTTTTTAACGCTGTATCGTTTTTATTGTGCGTCGATAAAGACAATCTTCAGGATAAACAGCATCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCa < 1:116233/143‑1 (MQ=255) gCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGGTAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCa < 1:110056/143‑1 (MQ=255) tCATGCATGGCGGGTTTTTAACTCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAg < 2:334872/143‑1 (MQ=255) atgcatgGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCCGACGTCCGGTACCGATTTTCATCACGCAGTAGga > 1:417924/1‑143 (MQ=255) tgcatgGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGgag > 1:274692/1‑143 (MQ=255) | ATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAG > NC_000913/3895105‑3895383 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |