New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4171803	40 (1.510)	5 (0.190)	5/260	NT	10.3%	intergenic (+47/‑254)	rrfB/murB	5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase
	?	NC_000913	= 4213162	48 (1.840)					intergenic (+3/‑72)	rrfE/yjaA	5S ribosomal RNA/stress response protein

GGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTG  >  NC_000913/4213021‑4213300                                                                                                                                              |                                                                                                                                           ggTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAa                                                                                                                                           >  1:340434‑M2/1‑142 (MQ=255)  ctcTGAGAAAACAGAATTCGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAat                                                                                                                                          >  1:372777‑M2/2‑141 (MQ=255)   tCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCAGCTGGCAGCGGGTGGGCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAAtt                                                                                                                                         >  1:490506/1‑143 (MQ=11)   tCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCAACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAata                                                                                                                                         <  1:142876‑M2/143‑4 (MQ=255)       aTAAAACAGAATTGTCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGaa                                                                                                                                     <  2:321643/143‑1 (MQ=18)           aaCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTCGGGAACTGCCAGGCATCAAatacaacgcaa                                                                                                                                 <  2:485142‑M2/143‑12 (MQ=255)              aGAATTTCCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAcccc                                                                                                                              <  1:174987/143‑1 (MQ=255)               gattttGCCGGGCGGCAGTAGCGCGGTGGTCCCACCTGGCCCCAGGCCGAACCCAGAAGTGAAACGCCGTAGGGCCGATGGTAGTGCGGGGGCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCg                                                                                                                             <  2:153818/140‑1 (MQ=14)               caagttGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCg                                                                                                                             <  2:40258/139‑1 (MQ=255)                  cttGCCTCGCGGCAGTAGCGCGGCGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTc                                                                                                                          <  1:34320/142‑1 (MQ=255)                     gCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGGAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGCTCCAt                                                                                                                       >  1:110443/1‑143 (MQ=255)                       cTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGGAACGCCGTAGCGCCGGTGGTAGTGTGGGGTCTCCCCATGCGAGAGTCGGGAACTGCCAGGCATCAAAGTAGAAAGACCGCGGTCTATaa                                                                                                                     >  2:298123/1‑143 (MQ=11)                       cTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGCGGGGTCGCCCCATGCGAGAGTAGGGAAGTGCCAGGCGTCCAATTAGACAAAGCCCGGTCCAGaa                                                                                                                     >  2:163403/1‑143 (MQ=14)                          gcggcAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGGAGTGAAACGCCGTCGCGCCGATGGCAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGCCCATAAGGc                                                                                                                  >  2:97208/1‑143 (MQ=255)                               aGTAGCGCGGTGGCCCCACCTGCCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCACATGCGAGAGTAGGGAACTGCCAGACATCAAataaaacaaaaggcccagtcttccgactgag                                                                                                             >  2:61140‑M2/1‑112 (MQ=255)                                  aGCGCGGTGGGCGCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAataaaacgaaaggcccagtctttcgactgagcct                                                                                                          >  2:303519‑M2/1‑109 (MQ=255)                                    cgcgGTGGTCCCACCTGACCCCATGCCGACCTCAGACGTGAAACGCCGTATCGCCGATGGTAGTGTCGGGTCTCCCCATGCGAGAGAAGGGAACTGCCAGCCATCAAATTAGAAAAACCCCGGTCCATAAGGCCgggggtatt                                                                                                        >  2:159013/1‑138 (MQ=17)                                    cgcgGTGGGCCGACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTGGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAataaaacgaaaggcccagtctttcgactgagccttt                                                                                                        >  2:166768‑M2/1‑107 (MQ=255)                                     gggttggtGCCACCTGAGCCCTTGCGGAACTGCGAAGTGAAACGGCGTAGCGTCGATGGTAGTGTGGGGGCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCACATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttttt                                                                                                       <  1:215456/139‑1 (MQ=18)                                      cgGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTg                                                                                                      <  1:83548/143‑1 (MQ=255)                                       ggtggtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGACGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGc                                                                                                     <  2:328094/143‑1 (MQ=255)                                        gtgggCCCACCTGACCCCATGCCGAACTCAGGAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCa                                                                                                    <  1:12895/143‑1 (MQ=255)                                            tCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAACAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATc                                                                                                >  2:267052/1‑143 (MQ=255)                                             gcgacctGGCCCCAGGCCGGACTCAGGAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCAAGAGTAGGGAACTGCCAGACATCAAataaaacaaaaggcccagtcttccgactgagccttttgttttatt                                                                                               >  2:136154‑M2/4‑98 (MQ=255)                                             cccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGCAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCACAAGGCCGGGGGTTGTTCCATACCa                                                                                               >  2:484631/1‑143 (MQ=17)                                                aCCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGCTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGCAACTGCCAGGCATCAAATTAGAAACACCCCGGTCCATAAGGCCGGGGTCTTTTGCATATCAatt                                                                                            >  2:68974/1‑143 (MQ=255)                                                 ccTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAAGTAGAAAAACCCCGGTCCATAAGGCCGGGGGGTTTTGCATGTCAatta                                                                                           >  1:10998/1‑143 (MQ=255)                                                    gACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTAttt                                                                                        <  1:269592/143‑1 (MQ=255)                                                     aCCGCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTg                                                                                       <  2:212930/143‑1 (MQ=255)                                                         cATGCCGCACTCAGAAGTGAACCGCCGTAGCGCCGGTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAATCCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCatg                                                                                   <  1:497748/143‑1 (MQ=255)                                                          aTGCCGAACGCAGAAGTGAAACGCCGCAGCGCCGATGGGAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCatga                                                                                  <  1:252223/143‑1 (MQ=255)                                                                        aGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGACAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCa                                                                    <  1:110216/143‑1 (MQ=255)                                                                        aGTGAAACGCCGGAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCa                                                                    <  2:65381/143‑1 (MQ=255)                                                                         gTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCAt                                                                   >  1:232699/1‑143 (MQ=255)                                                                             aaCGCCGTAGCGGCGAGGGTAGTGTGGGGTCTCCCCGTGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCa                                                               <  1:71629/143‑1 (MQ=255)                                                                                 ccGTAGCGCCGATGGTAGTGTTGGGCCCCCCCATGCCAGAGTAGGGAACTGCCAGGCATCAAATTAGAAACACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTc                                                           <  1:172008/143‑1 (MQ=37)                                                                                    tAGCGGCGTGGGTAGTGTGGGGGCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGt                                                        <  1:232114/143‑1 (MQ=255)                                                                                      gcgcCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGtat                                                      >  1:231148/1‑143 (MQ=255)                                                                                                     tgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTcgtcgt                                       >  2:56463/1‑143 (MQ=255)                                                                                                             ccccATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTATGCATTGGGATGGTTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAAt                               <  1:325136/143‑1 (MQ=38)                                                                                                              cccATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAGACCGCTGTCCATAAGGACGGGGGTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTGATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAAtt                              >  2:423159/1‑143 (MQ=39)                                                                                                              cccATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAAtt                              >  1:152822/1‑143 (MQ=255)                                                                                                               ccATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGACGGGAGTCTCATGTCAGTCCTGTATATCCAAATTCGCCGTAATCACATTa                             >  1:191771/1‑143 (MQ=39)                                                                                                                   gCGAGAGGAGGGACCTGCCAGGCATCAGATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGt                         <  1:508780/143‑1 (MQ=255)                                                                                                                     gagaGTAGGGAACTGCCAGGCATCGAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCTTCGTAATCAAATTACTGTTc                       <  2:158394/143‑1 (MQ=255)                                                                                                                     gagaGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTc                       <  1:314479/143‑1 (MQ=255)                                                                                                                         gtggggAACAGGCAGGCATCAAATTAGAAAAACCCCTGTCCATAAGGCCGGGGTTTTTTGCATATGAGTTGTTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGa                   <  2:166756/140‑1 (MQ=255)                                                                                                                              ggaCTGCGCGGCATCAAGTTAGAGAAGCCCCGGGCCATAAGGCCGGGGTTTTTTGCATATCAATGATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTg              <  2:268721/141‑1 (MQ=255)                                                                                                                                gcTGCCAGGTATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGaa            <  2:118514/142‑1 (MQ=255)                                                                                                                                aCTGCCAGGCATCTAATTGGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGaa            <  2:160720/143‑1 (MQ=255)                                                                                                                                aCTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGaa            <  1:36017/143‑1 (MQ=255)                                                                                                                                 gtGCTAGGCATCAAATTAGAAAAACCTCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGGCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTTGCGATCTTGaaa           <  2:264287/142‑1 (MQ=255)                                                                                                                                 cTGGCAGGCATCAACTTAGAAAAACCGCGGTCCATAAGGGCGGGGTTGTGTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGGATATCCAAATGCGTCGTAATCAAATTACTGTTCGCGATCTTGaaa           <  2:13103/143‑1 (MQ=255)                                                                                                                                 cTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGGAATCAAATTACTGTTCGCGATCTTGaaa           >  2:295818/1‑143 (MQ=255)                                                                                                                                 cTGCCAGGCAGCACATTAGCAAACCCCCTCTTGTTTAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGaaa           <  1:138273/143‑1 (MQ=255)                                                                                                                                   gCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAGGc         >  2:76997/1‑143 (MQ=255)                                                                                                                                      agacATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCaaa      <  1:398084/140‑1 (MQ=255)                                                                                                                                      aGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCaaa      >  1:445826/1‑143 (MQ=255)                                                                                                                                          aTCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTg  >  1:432099/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                           GGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTG  >  NC_000913/4213021‑4213300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.