mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.9% | 125.8 / 53.1 | 105 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 34 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 11 (0.230) | 6/272 | 5.3 | 17.8% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 4038811 | 53 (1.060) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 11 (0.230) | 6/272 | 5.3 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 227052 | 26 (0.520) | 11 (0.230) | 6/272 | 5.3 | 30.6% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 382323 | NA (NA) | 8 (0.170) | 6/274 | 5.4 | NA | noncoding (1064/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382348 | NA (NA) | noncoding (1089/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4094338 = | NA (NA) | 37 (0.880) +23 bp |
4/238 | 5.7 | NA | noncoding (11/32 nt) | other | REP299a |
| ? | NC_000913 | = 4094682 | NA (NA) | intergenic (‑410/+41) | rhaD/rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase | |||||
| * | ? | NC_000913 | = 4171607 | 51 (1.020) | 5 (0.100) | 5/272 | 5.8 | 9.3% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 3946688 | 107 (2.140) | 5 (0.100) | 5/272 | 5.8 | 4.7% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4171601 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 2945962 | NA (NA) | 5 (0.110) | 5/270 | 5.8 | NA | noncoding (32/34 nt) | other | REP206b |
| ? | NC_000913 | = 2945992 | NA (NA) | noncoding (2/34 nt) | other | REP206b | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 5 (0.100) | 5/272 | 5.8 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 228744 | 29 (0.580) | 5 (0.100) | 5/272 | 5.8 | 15.3% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA | |||||