| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 568,268 | IS1 (–) +9 bp | intergenic (+21/‑39) | renD → / → emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 47 (1.070) | 42/284 | 0.1 | 97.8% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 568268 = | 1 (0.020) | intergenic (+21/‑47) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 568276 | 0 (0.000) | 42 (0.960) | 34/282 | 0.2 | 100% | intergenic (+29/‑39) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | = 1050545 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
AAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/568135‑568276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT < NC_000913/1050545‑1050411 AAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAG < 1:107176/143‑1 AGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTCAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGATATTGAAGATATATAAAAAAACATCAAAGGGAACACAATGATGAAACAAGTGAGTTGAGATCAACCTGTAGG > 1:194525/1‑143 AGAATGGGAAGGAAAGGGGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATAAAACAAAAAATAAGAGTAAATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGACAAAACTGTAGG > 1:710432/1‑143 GAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGACGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAAAACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGct > 2:280344/1‑141 TGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCAAGAGTGCCGCGAAGAAACTGTGATTGAGGGAATATAAAAGAACATCAATGGGAACAAAATGATGAAACAGGTGAGTTGAGTTCAACCTGTAGGTAAc > 2:537334/1‑142 GGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGTGTATATAATAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCC < 1:439933/143‑1 gttgaCACGAATCTGATTTTTAATGAGTTTCTCCAGATTGCCGCGATTAAACTGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTA < 1:174729/138‑1 GTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGTTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTACGTAATCTATCCAACTTc > 1:501640/1‑142 AGCACGACTCTGGTTTGTAAGGTGTGTCGCCAGAGGGCAGCCATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGTGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTG < 2:633160/143‑1 ggACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCTGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGA < 1:478231/141‑1 TGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGACACGGGTATTGAGTGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTTTTTT < 1:447674/143‑1 GATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTCTTGAGGGTATATAAAAGAACATCAATGAGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTA > 1:495961/1‑143 ATTTTGAAGGAGTGTCGCCAGAGTGCCGCGAGGAAACGGGGATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTAT < 1:140617/143‑1 TTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTCGGTAATGACTCCAAATTATTGATAGTGTTTTATGT > 2:400302/1‑143 TTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAACCTGTAGATAATGAATCAAACATATAGATAGAGTTTTATGTTC > 1:302576/1‑143 AGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAA > 1:632451/1‑143 tgttgtCAGAGTGTCGCGATGTAACGGGTATTTAGGGTATATAAAATAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATG < 1:629678/137‑1 TCGCCAGAGTGCCGCGATGAAACGGGTATTGGGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTACAACTTATTGATAGTGTTTTATGTGCCGATAATGCC > 2:589402/1‑143 CGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATCGTGTTTTATGTTTAGATAATacac > 1:792257/1‑139 CGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC > 1:530141/1‑143 CCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTG < 1:5742/143‑1 GATGAAACGGGTATTGAGTGTTTTGTAAAAAACATCATTGGGATCACAATGATGAAATAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT < 1:105322/143‑1 AAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATACTCAGATAATGCCCGATGACTTTGTCATGCAG > 2:349482/1‑143 CGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTC < 2:100370/143‑1 AGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGAGTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGACTGATGACTTTGTGATGCAGCTCCAACGATTT > 1:442803/1‑143 AGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGTTAGTGCCCAACGTTCAGCTAATGCCCGATGACTTTGTCATGCAGCTCTACCGATTT > 1:179143/1‑143 AGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTT > 1:297211/1‑143 ATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCACACTGTCGGTCATGCCTCCCACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATAACTTAGTCATGCAGCTCCACCGATTTTGAac > 1:229707/1‑141 AAAGAACATCCATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCATACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAC < 2:12427/143‑1 CATCAATGTGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTTAATTACTCCATCTTATTGATATTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGAC < 1:222541/143‑1 GGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATCGTGTTTTATGTTCAGATATTGCCCGATGACTTTGTCTTGCAGCTCCACCGATTATGAGAACGACAGCGAATTCCGTCC > 1:194563/1‑143 GAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATACCAGATGACTATGTCATGCAGCTCAAACGATTTTGAGAACGACAGCGACTTCCGTCac > 1:33957/1‑141 AATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGATCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTACCAGCCGT > 1:620147/1‑143 AAACAGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGT < 2:800126/143‑1 AGGTGAGTTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTAATTTATGTTCAGATAATGCCAGATGACTTTGTCATGCAGCTTCACGGATTTTTAGAACGAAAGAGACTTCCGTCCCAGCCGTGCCAGGTGCTG > 2:291653/1‑143 AGTTGCGTTCAAACTGTTGGTATTGACTCCATTTTATTTATATTTTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCA < 1:228210/143‑1 AGTTGATGTCAAACTGTAGGTAATGCCTCCAACTTATTGATAGTGTTTTATGTTCAGATATTGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCA < 2:442803/143‑1 TTGAGTTCAAACTGTAGGTAATGCCTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTGTGTCATGCAGCTCGACCGATTCTCAGAACGACAGCGACTTCGGCCGCAGCCCGTCCAGCTGCTGCCCCAGA > 2:828670/1‑143 TTGAGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCACGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCCTGCCAGGTGATGCCTCAca > 2:784911/1‑141 AGTTCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTC < 2:179143/143‑1 TCAAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGG > 1:437211/1‑143 AAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT > 1:381837/1‑143 AAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGAATCAGGTT > 1:192702/1‑143 AAACTGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATCTTGAGCACGACGGCGCCTTCCGTCCCATCCGTTCCAGGTGCTGCCTCAGATTCAGGTT > 1:54697/1‑143 AAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/568135‑568276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTT < NC_000913/1050545‑1050411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |