| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,979,486 | IS5 (+) +4 bp | intergenic (‑271/‑264) | insA‑5 ← / → uspC | IS1 protein InsA/universal stress protein C |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 49 (1.110) | 35/284 | 0.2 | 100% | intergenic (‑271/‑267) | insA‑5/uspC | IS1 protein InsA/universal stress protein C |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 58 (1.320) | 35/284 | 0.2 | 100% | intergenic (‑274/‑264) | insA‑5/uspC | IS1 protein InsA/universal stress protein C |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
AATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1979349‑1979489‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < NC_000913/2290113‑2289972 AATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGAGAAGCTATTTTTAAACAGACACTTACCGCACACCAAACTAAGa > 2:32317/1‑142 ATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCAGGCAATACGAGGGAAGCTCTTTTTAAACAGACCCTTACCGCACAGCAAACTAAGGA > 1:84551/1‑143 ATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATCATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTACGAACAAat > 1:101300/1‑141 ATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGT > 2:37987/1‑143 cgtAATGTGATGTTGCGCTCAGTCAAAATAACTCACCGTATATAATCATCTGCTATAAATAATCACCTTAATACAATACCTGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCC < 2:128307/140‑1 CGAAATGGTATGTTGCTCGCAGTTTACATATCTCACCGTAAATAATCATCTGTTATAAATACTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCC < 2:204902/143‑1 GATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAAAAAAACTAATTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCAATGATATG > 1:13281/1‑143 GTTGCGCACAGTCAAAATAACTCGCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACCAAGGAAGGTGCGAACAAGTCCCTGATATGAGA < 2:781220/143‑1 GCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAAAAAGTCCCTGATATGAGATCctc > 2:332063/1‑140 atatTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTT < 1:577058/139‑1 aaTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCAATTTCATGCAATACCAGTTAAGCTTTTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACTAGTCCCTGATATGAGATCATGTTTG < 2:88575/141‑1 AAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC > 2:544218/1‑143 ACTCACCGTAAATAATCATCTGCTATAAATCATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTAATCTGGAG > 1:535649/1‑143 TCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCTCACAACAAACTAAGGAAGGAGCGAACAAGTCCCAGATATGAGATAATGTTTATCATATGGAGCC > 1:145674/1‑143 CCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATATTCGTCATCTGGCCCCATA > 1:792883/1‑143 AATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA < 2:693558/143‑1 ATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGAAACTTACCTCCCTACATACTAAGGAAGGTGCGTACAAGTCCCAGATATGAAATAATGTTTGTCATCTGGAGCCATAGAACAG > 1:110539/1‑143 taTGCTATAAATAATCACTTTCATGCAAGACCAGATAAGCTATTTTTAAACAGACACTTACCACACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT < 2:508265/141‑1 CTGCTATTAGTAGTCACTTTCACGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCAGAACCAACTAAGGAAGGTGCGAACTAGTCCTTGATATGAGATCATGTTTGTCACCTGGAGCCATAGAACAGGGTTCATC < 2:819109/143‑1 CTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGCCACTTACCGCCCAACAATCTAAGGAAGGTGCGAACAAATAAATGATATAAGATCATGTTTGTCATCAGGAGCCATAGAACAGGGTTCATCATG > 1:8311/1‑143 CTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACCACAAACTAAGTAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGTAGCCATAGAACAGGGTTCATCATG < 2:236844/143‑1 ATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGACGGTGCGAACAAGTCACTAATAAAAGATCATGTTTGTCATCTGGAGATATAAAACAGGGTTCATCcttag > 1:327462/1‑138 TTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGACCAAGTCCCTGATATGAGATCATGTTTGTCATATAAAGCCATAGAACAGGGTTCATCATAAGACATCAcatacc > 1:401148/1‑137 TTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTGACCGCACTGCAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTAATCAACTTAC > 1:561421/1‑143 TGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAATCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACTGTGTTCATCATGAGTCATCAACTTACCTTCG < 1:415427/143‑1 GCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGC > 2:211034/1‑143 CAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTTAGTTATGTGCTAACAAGTCCCTGATATGAGATCATGTTTGTCAGCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCC < 1:621860/143‑1 AAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGCTGAGAACAAGTCCCTGATATGAGATAATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACGTAACTTCGCACACAGTAAATT > 2:145573/1‑143 CTATTTTTAAACAGACACTTAACGCACAACAAACTAAGGAAGGTGATAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTAATCAGGAGTCGTCAACTTAACACAACCGACAGTGAATTCgc > 2:271625/1‑141 ATTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGGGAATTCAGCA > 2:365020/1‑143 TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAATCATCAACTTACCTTCGCCGACAGTGAATTCAGCAG > 1:639367/1‑143 AAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGC < 1:605846/143‑1 ACACTTACCGCACAACAAACTAAGGAAGGTGTGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAAAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTC < 1:544218/143‑1 CACTTACCGCACAACAAACTAAGGAAGGTGCGAGGATGTCCCTGATATGAGTTCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCA < 1:553972/143‑1 ACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGCGCCATAGAACAGGGTTCATCTTCAGTCATCAACTTACCTTCGCCGACTGTGAATTCAGAAGTAAGCGCCGTCAG > 1:315699/1‑143 ACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGAATTCATAAAGAGTCATAAACTTACCTTCACCGACAGAGAATTCAGAAGTAAGCGCCGaaag > 1:173415/1‑139 gattttAACTAAGGAAGGTGCGAACATGTCCCTGATATGAGATCATGTTTGTCATCGGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCTGCAGTAAGCGCCGTCAGACCAGAAAA < 2:777891/137‑1 ACAACAAACTAAGGATGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAA < 2:11857/143‑1 ACAACAAACTAAGGAATGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAA < 2:219192/143‑1 AACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGACTCATCAACTTCCCTTCGCCCACAGTCCATTCACCAGTAAGCCCCCTCACACCAGAAcaca > 2:210681/1‑139 aaggACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAG < 2:396947/139‑1 ACAAACTAAGGAAGGTGCGATCAAGTCCCTTATATGAGTTCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAG < 1:332063/143‑1 ACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAACGAGATTT > 2:325228/1‑143 ACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAGCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACATTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACGCGAAAAGCGATTT > 2:748272/1‑143 CTAAGGAAGGTGCGAACAAGTCCCTGATCTGGGCTCGGGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGAACAGAAAAGAGATTTa > 1:791451/1‑142 TAAGGATGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC < 1:514067/143‑1 TAAGGAAGGTGCGAACAAGTCCTTGATATGTGATCATGTTTGTCATCTGTATCCATAGAACAGGGTTCATCATGAGTCATCAACGTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC < 1:276673/143‑1 TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC > 1:791524/1‑143 TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC < 1:688782/143‑1 TAAGGAAAGTGCGAACAAGGCCCTGATATGAGATCATGTTTGTCATCTGGAGCCACAGAACAGCGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC < 2:200566/143‑1 AAGGAAGTTGCGTACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATCACTCATCAACTTACCTTCGCCGACAGGGAATTCAGCAGTAAGCGCCGCCACACCAGACAAGAGATTTTCT > 2:133948/1‑143 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCT > 2:828676/1‑143 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCAGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAGGAGcatttat > 2:300417/1‑136 AGGATGGTGCGTACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGACTGTGTTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < 2:179380/143‑1 AGGAATGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < 2:642994/143‑1 AGGAAGGTGCGAGCATGTCCCTGATATGAGATCATGTTTGTCATCTGCAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < 2:8906/143‑1 AGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT > 1:515281/1‑143 AGGAAGCTGCGAACAAGTCCCGGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < 2:775801/143‑1 AATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1979349‑1979489‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < NC_000913/2290113‑2289972 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |